Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05350 and PGA1_c05360 overlap by 4 nucleotides PGA1_c05360 and PGA1_c05370 overlap by 4 nucleotides
PGA1_c05350: PGA1_c05350 - dimodular nonribosomal peptide synthetase, at 532,753 to 537,387
_c05350
PGA1_c05360: PGA1_c05360 - putative glycosyl transferase, at 537,384 to 538,454
_c05360
PGA1_c05370: PGA1_c05370 - polyketide synthase, at 538,451 to 544,939
_c05370
Position (kb) 537
538
539 Strain fitness (log2 ratio) -2
-1
0
1
2 at 536.428 kb on - strand, within PGA1_c05350 at 536.557 kb on + strand, within PGA1_c05350 at 536.643 kb on - strand, within PGA1_c05350 at 536.669 kb on + strand, within PGA1_c05350 at 536.669 kb on + strand, within PGA1_c05350 at 536.731 kb on - strand, within PGA1_c05350 at 536.751 kb on + strand, within PGA1_c05350 at 536.825 kb on + strand, within PGA1_c05350 at 536.877 kb on + strand, within PGA1_c05350 at 536.923 kb on + strand, within PGA1_c05350 at 536.938 kb on + strand at 536.963 kb on + strand at 537.012 kb on + strand at 537.020 kb on - strand at 537.041 kb on + strand at 537.062 kb on + strand at 537.062 kb on + strand at 537.081 kb on - strand at 537.086 kb on - strand at 537.087 kb on - strand at 537.101 kb on - strand at 537.230 kb on + strand at 537.241 kb on + strand at 537.250 kb on - strand at 537.366 kb on + strand at 537.381 kb on - strand at 537.395 kb on + strand at 537.470 kb on - strand at 537.519 kb on - strand, within PGA1_c05360 at 537.524 kb on + strand, within PGA1_c05360 at 537.538 kb on + strand, within PGA1_c05360 at 537.538 kb on + strand, within PGA1_c05360 at 537.593 kb on + strand, within PGA1_c05360 at 537.636 kb on + strand, within PGA1_c05360 at 537.644 kb on - strand, within PGA1_c05360 at 537.687 kb on - strand, within PGA1_c05360 at 537.718 kb on - strand, within PGA1_c05360 at 537.720 kb on + strand, within PGA1_c05360 at 537.742 kb on + strand, within PGA1_c05360 at 537.742 kb on + strand, within PGA1_c05360 at 537.750 kb on - strand, within PGA1_c05360 at 537.785 kb on + strand, within PGA1_c05360 at 537.793 kb on - strand, within PGA1_c05360 at 537.844 kb on + strand, within PGA1_c05360 at 537.857 kb on + strand, within PGA1_c05360 at 537.868 kb on + strand, within PGA1_c05360 at 537.919 kb on - strand, within PGA1_c05360 at 538.004 kb on + strand, within PGA1_c05360 at 538.012 kb on - strand, within PGA1_c05360 at 538.012 kb on - strand, within PGA1_c05360 at 538.012 kb on - strand, within PGA1_c05360 at 538.027 kb on - strand, within PGA1_c05360 at 538.027 kb on - strand, within PGA1_c05360 at 538.074 kb on - strand, within PGA1_c05360 at 538.093 kb on - strand, within PGA1_c05360 at 538.102 kb on + strand, within PGA1_c05360 at 538.141 kb on - strand, within PGA1_c05360 at 538.209 kb on + strand, within PGA1_c05360 at 538.237 kb on + strand, within PGA1_c05360 at 538.297 kb on - strand, within PGA1_c05360 at 538.315 kb on - strand, within PGA1_c05360 at 538.333 kb on + strand, within PGA1_c05360 at 538.338 kb on + strand, within PGA1_c05360 at 538.341 kb on - strand, within PGA1_c05360 at 538.347 kb on + strand, within PGA1_c05360 at 538.355 kb on + strand at 538.410 kb on + strand at 538.414 kb on + strand at 538.483 kb on + strand at 538.560 kb on - strand at 538.571 kb on + strand at 538.596 kb on - strand at 538.596 kb on - strand at 538.596 kb on - strand at 538.596 kb on - strand at 538.610 kb on + strand at 538.611 kb on + strand at 538.719 kb on + strand at 538.719 kb on + strand at 538.719 kb on + strand at 538.727 kb on - strand at 538.727 kb on - strand at 538.732 kb on + strand at 538.740 kb on - strand at 538.755 kb on + strand at 538.781 kb on + strand at 539.056 kb on + strand at 539.071 kb on + strand at 539.175 kb on + strand, within PGA1_c05370 at 539.293 kb on + strand, within PGA1_c05370 at 539.320 kb on + strand, within PGA1_c05370 at 539.339 kb on + strand, within PGA1_c05370 at 539.379 kb on + strand, within PGA1_c05370 at 539.389 kb on + strand, within PGA1_c05370 at 539.412 kb on + strand, within PGA1_c05370 at 539.422 kb on + strand, within PGA1_c05370 at 539.451 kb on - strand, within PGA1_c05370
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 536,428 - PGA1_c05350 0.79 +0.6 536,557 + PGA1_c05350 0.82 +1.9 536,643 - PGA1_c05350 0.84 +0.9 536,669 + PGA1_c05350 0.84 +0.7 536,669 + PGA1_c05350 0.84 +0.0 536,731 - PGA1_c05350 0.86 +0.3 536,751 + PGA1_c05350 0.86 +1.6 536,825 + PGA1_c05350 0.88 +1.1 536,877 + PGA1_c05350 0.89 +1.2 536,923 + PGA1_c05350 0.90 -0.5 536,938 + +1.3 536,963 + +0.2 537,012 + +1.0 537,020 - +0.5 537,041 + +1.2 537,062 + +0.2 537,062 + +0.3 537,081 - +0.5 537,086 - +1.7 537,087 - +0.7 537,101 - +0.4 537,230 + +0.5 537,241 + +0.9 537,250 - +0.7 537,366 + +0.5 537,381 - -0.6 537,395 + +0.3 537,470 - +0.8 537,519 - PGA1_c05360 0.13 +0.4 537,524 + PGA1_c05360 0.13 -0.1 537,538 + PGA1_c05360 0.14 +0.4 537,538 + PGA1_c05360 0.14 -2.5 537,593 + PGA1_c05360 0.20 +0.8 537,636 + PGA1_c05360 0.24 +1.3 537,644 - PGA1_c05360 0.24 +0.8 537,687 - PGA1_c05360 0.28 +0.6 537,718 - PGA1_c05360 0.31 -0.1 537,720 + PGA1_c05360 0.31 +0.9 537,742 + PGA1_c05360 0.33 +1.6 537,742 + PGA1_c05360 0.33 +0.8 537,750 - PGA1_c05360 0.34 -0.1 537,785 + PGA1_c05360 0.37 +1.0 537,793 - PGA1_c05360 0.38 +1.9 537,844 + PGA1_c05360 0.43 +0.2 537,857 + PGA1_c05360 0.44 -0.2 537,868 + PGA1_c05360 0.45 -0.9 537,919 - PGA1_c05360 0.50 +0.0 538,004 + PGA1_c05360 0.58 +1.0 538,012 - PGA1_c05360 0.59 -0.9 538,012 - PGA1_c05360 0.59 +0.2 538,012 - PGA1_c05360 0.59 +1.3 538,027 - PGA1_c05360 0.60 +0.9 538,027 - PGA1_c05360 0.60 +0.8 538,074 - PGA1_c05360 0.64 +1.5 538,093 - PGA1_c05360 0.66 -0.3 538,102 + PGA1_c05360 0.67 +0.7 538,141 - PGA1_c05360 0.71 +0.1 538,209 + PGA1_c05360 0.77 +0.0 538,237 + PGA1_c05360 0.80 +1.5 538,297 - PGA1_c05360 0.85 +1.1 538,315 - PGA1_c05360 0.87 +0.3 538,333 + PGA1_c05360 0.89 +0.6 538,338 + PGA1_c05360 0.89 +0.4 538,341 - PGA1_c05360 0.89 +0.5 538,347 + PGA1_c05360 0.90 +0.7 538,355 + +1.1 538,410 + +0.5 538,414 + +0.7 538,483 + +1.2 538,560 - +0.6 538,571 + +1.4 538,596 - +0.4 538,596 - +1.5 538,596 - +0.6 538,596 - +0.6 538,610 + +0.7 538,611 + -0.1 538,719 + +0.7 538,719 + +0.6 538,719 + +0.2 538,727 - +0.8 538,727 - +0.3 538,732 + -0.4 538,740 - +0.5 538,755 + +0.1 538,781 + +0.2 539,056 + +2.3 539,071 + +1.2 539,175 + PGA1_c05370 0.11 +0.5 539,293 + PGA1_c05370 0.13 +0.1 539,320 + PGA1_c05370 0.13 +0.3 539,339 + PGA1_c05370 0.14 +1.0 539,379 + PGA1_c05370 0.14 +1.4 539,389 + PGA1_c05370 0.14 -0.4 539,412 + PGA1_c05370 0.15 -0.6 539,422 + PGA1_c05370 0.15 +0.1 539,451 - PGA1_c05370 0.15 +0.2
Or see this region's nucleotide sequence