Strain Fitness in Marinobacter adhaerens HP15 around HP15_p42g24

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p42g23 and HP15_p42g24 overlap by 4 nucleotidesHP15_p42g24 and HP15_p42g25 are separated by 18 nucleotides HP15_p42g23: HP15_p42g23 - TRAG family protein, at 17,183 to 19,090 _p42g23 HP15_p42g24: HP15_p42g24 - peptidase S26C, conjugative transfer signal peptidase TraF, at 19,087 to 19,623 _p42g24 HP15_p42g25: HP15_p42g25 - DNA topoisomerase III, at 19,642 to 21,702 _p42g25 Position (kb) 19 20Strain fitness (log2 ratio) -2 -1 0 1 2at 18.177 kb on + strand, within HP15_p42g23at 18.210 kb on + strand, within HP15_p42g23at 18.245 kb on + strand, within HP15_p42g23at 18.245 kb on - strand, within HP15_p42g23at 18.277 kb on + strand, within HP15_p42g23at 18.277 kb on + strand, within HP15_p42g23at 18.277 kb on + strand, within HP15_p42g23at 18.287 kb on + strand, within HP15_p42g23at 18.295 kb on - strand, within HP15_p42g23at 18.295 kb on - strand, within HP15_p42g23at 18.319 kb on + strand, within HP15_p42g23at 18.329 kb on + strand, within HP15_p42g23at 18.414 kb on - strand, within HP15_p42g23at 18.510 kb on - strand, within HP15_p42g23at 18.537 kb on + strand, within HP15_p42g23at 18.545 kb on - strand, within HP15_p42g23at 18.623 kb on + strand, within HP15_p42g23at 18.624 kb on + strand, within HP15_p42g23at 18.660 kb on + strand, within HP15_p42g23at 18.680 kb on - strand, within HP15_p42g23at 18.854 kb on + strand, within HP15_p42g23at 18.869 kb on - strand, within HP15_p42g23at 18.992 kb on - strandat 19.046 kb on - strandat 19.065 kb on + strandat 19.169 kb on - strand, within HP15_p42g24at 19.179 kb on - strand, within HP15_p42g24at 19.220 kb on - strand, within HP15_p42g24at 19.223 kb on - strand, within HP15_p42g24at 19.268 kb on - strand, within HP15_p42g24at 19.268 kb on - strand, within HP15_p42g24at 19.292 kb on + strand, within HP15_p42g24at 19.294 kb on + strand, within HP15_p42g24at 19.300 kb on - strand, within HP15_p42g24at 19.300 kb on - strand, within HP15_p42g24at 19.302 kb on - strand, within HP15_p42g24at 19.388 kb on + strand, within HP15_p42g24at 19.434 kb on + strand, within HP15_p42g24at 19.434 kb on + strand, within HP15_p42g24at 19.451 kb on - strand, within HP15_p42g24at 19.451 kb on - strand, within HP15_p42g24at 19.451 kb on - strand, within HP15_p42g24at 19.464 kb on - strand, within HP15_p42g24at 19.501 kb on - strand, within HP15_p42g24at 19.503 kb on + strand, within HP15_p42g24at 19.508 kb on + strand, within HP15_p42g24at 19.508 kb on + strand, within HP15_p42g24at 19.508 kb on + strand, within HP15_p42g24at 19.526 kb on + strand, within HP15_p42g24at 19.570 kb on - strandat 19.577 kb on + strandat 19.636 kb on - strandat 19.694 kb on + strandat 19.695 kb on - strandat 19.713 kb on + strandat 19.713 kb on + strandat 19.729 kb on + strandat 19.794 kb on + strandat 19.797 kb on - strandat 19.807 kb on - strandat 19.807 kb on - strandat 19.901 kb on - strand, within HP15_p42g25at 19.932 kb on + strand, within HP15_p42g25at 19.940 kb on - strand, within HP15_p42g25at 19.988 kb on - strand, within HP15_p42g25at 20.131 kb on + strand, within HP15_p42g25at 20.131 kb on + strand, within HP15_p42g25at 20.137 kb on - strand, within HP15_p42g25at 20.139 kb on - strand, within HP15_p42g25at 20.139 kb on - strand, within HP15_p42g25at 20.148 kb on + strand, within HP15_p42g25at 20.165 kb on + strand, within HP15_p42g25at 20.165 kb on + strand, within HP15_p42g25at 20.165 kb on + strand, within HP15_p42g25at 20.191 kb on - strand, within HP15_p42g25at 20.218 kb on - strand, within HP15_p42g25at 20.218 kb on - strand, within HP15_p42g25at 20.218 kb on - strand, within HP15_p42g25at 20.218 kb on - strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.246 kb on + strand, within HP15_p42g25at 20.254 kb on - strand, within HP15_p42g25at 20.254 kb on - strand, within HP15_p42g25at 20.254 kb on - strand, within HP15_p42g25at 20.254 kb on - strand, within HP15_p42g25at 20.254 kb on - strand, within HP15_p42g25at 20.266 kb on - strand, within HP15_p42g25at 20.292 kb on + strand, within HP15_p42g25at 20.400 kb on + strand, within HP15_p42g25at 20.405 kb on + strand, within HP15_p42g25at 20.407 kb on + strand, within HP15_p42g25at 20.413 kb on - strand, within HP15_p42g25at 20.415 kb on - strand, within HP15_p42g25at 20.464 kb on - strand, within HP15_p42g25at 20.465 kb on - strand, within HP15_p42g25at 20.513 kb on + strand, within HP15_p42g25at 20.513 kb on + strand, within HP15_p42g25at 20.521 kb on - strand, within HP15_p42g25at 20.521 kb on - strand, within HP15_p42g25at 20.578 kb on + strand, within HP15_p42g25at 20.578 kb on + strand, within HP15_p42g25at 20.606 kb on + strand, within HP15_p42g25at 20.611 kb on + strand, within HP15_p42g25

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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18,177 + HP15_p42g23 0.52 -0.4
18,210 + HP15_p42g23 0.54 +0.6
18,245 + HP15_p42g23 0.56 -1.1
18,245 - HP15_p42g23 0.56 -0.2
18,277 + HP15_p42g23 0.57 -0.4
18,277 + HP15_p42g23 0.57 +0.5
18,277 + HP15_p42g23 0.57 +0.5
18,287 + HP15_p42g23 0.58 -1.5
18,295 - HP15_p42g23 0.58 -0.9
18,295 - HP15_p42g23 0.58 +0.0
18,319 + HP15_p42g23 0.60 +0.3
18,329 + HP15_p42g23 0.60 +0.9
18,414 - HP15_p42g23 0.65 +0.3
18,510 - HP15_p42g23 0.70 -0.7
18,537 + HP15_p42g23 0.71 -1.5
18,545 - HP15_p42g23 0.71 +0.6
18,623 + HP15_p42g23 0.75 +0.4
18,624 + HP15_p42g23 0.76 +0.5
18,660 + HP15_p42g23 0.77 +0.3
18,680 - HP15_p42g23 0.78 +0.1
18,854 + HP15_p42g23 0.88 +0.0
18,869 - HP15_p42g23 0.88 -0.0
18,992 - +0.2
19,046 - +0.0
19,065 + -0.1
19,169 - HP15_p42g24 0.15 -0.2
19,179 - HP15_p42g24 0.17 +0.3
19,220 - HP15_p42g24 0.25 -0.9
19,223 - HP15_p42g24 0.25 +0.4
19,268 - HP15_p42g24 0.34 +0.2
19,268 - HP15_p42g24 0.34 +0.6
19,292 + HP15_p42g24 0.38 +0.3
19,294 + HP15_p42g24 0.39 -1.3
19,300 - HP15_p42g24 0.40 +0.3
19,300 - HP15_p42g24 0.40 +0.5
19,302 - HP15_p42g24 0.40 -1.5
19,388 + HP15_p42g24 0.56 +0.5
19,434 + HP15_p42g24 0.65 +1.4
19,434 + HP15_p42g24 0.65 -0.2
19,451 - HP15_p42g24 0.68 +0.9
19,451 - HP15_p42g24 0.68 +0.1
19,451 - HP15_p42g24 0.68 -1.5
19,464 - HP15_p42g24 0.70 +0.6
19,501 - HP15_p42g24 0.77 +0.6
19,503 + HP15_p42g24 0.77 +1.2
19,508 + HP15_p42g24 0.78 -0.1
19,508 + HP15_p42g24 0.78 +1.3
19,508 + HP15_p42g24 0.78 -1.5
19,526 + HP15_p42g24 0.82 +2.4
19,570 - +1.0
19,577 + +0.7
19,636 - -1.2
19,694 + +0.7
19,695 - -0.0
19,713 + -0.5
19,713 + +0.2
19,729 + +0.9
19,794 + +0.4
19,797 - +1.0
19,807 - +0.8
19,807 - +0.5
19,901 - HP15_p42g25 0.13 +0.1
19,932 + HP15_p42g25 0.14 +0.3
19,940 - HP15_p42g25 0.14 +0.0
19,988 - HP15_p42g25 0.17 -1.3
20,131 + HP15_p42g25 0.24 +0.6
20,131 + HP15_p42g25 0.24 -0.8
20,137 - HP15_p42g25 0.24 +0.5
20,139 - HP15_p42g25 0.24 -1.2
20,139 - HP15_p42g25 0.24 -0.8
20,148 + HP15_p42g25 0.25 +0.1
20,165 + HP15_p42g25 0.25 +0.0
20,165 + HP15_p42g25 0.25 +0.3
20,165 + HP15_p42g25 0.25 +0.2
20,191 - HP15_p42g25 0.27 +0.5
20,218 - HP15_p42g25 0.28 +0.1
20,218 - HP15_p42g25 0.28 -0.2
20,218 - HP15_p42g25 0.28 -1.7
20,218 - HP15_p42g25 0.28 -0.1
20,246 + HP15_p42g25 0.29 +2.5
20,246 + HP15_p42g25 0.29 +0.2
20,246 + HP15_p42g25 0.29 -0.3
20,246 + HP15_p42g25 0.29 -0.6
20,246 + HP15_p42g25 0.29 +0.3
20,246 + HP15_p42g25 0.29 +0.2
20,246 + HP15_p42g25 0.29 -1.6
20,246 + HP15_p42g25 0.29 -0.0
20,246 + HP15_p42g25 0.29 +0.5
20,246 + HP15_p42g25 0.29 +0.6
20,246 + HP15_p42g25 0.29 -2.7
20,254 - HP15_p42g25 0.30 +0.6
20,254 - HP15_p42g25 0.30 -0.2
20,254 - HP15_p42g25 0.30 +0.7
20,254 - HP15_p42g25 0.30 -2.0
20,254 - HP15_p42g25 0.30 +0.1
20,266 - HP15_p42g25 0.30 +1.6
20,292 + HP15_p42g25 0.32 +0.7
20,400 + HP15_p42g25 0.37 +0.4
20,405 + HP15_p42g25 0.37 +0.6
20,407 + HP15_p42g25 0.37 +0.3
20,413 - HP15_p42g25 0.37 -0.2
20,415 - HP15_p42g25 0.38 -1.1
20,464 - HP15_p42g25 0.40 -1.3
20,465 - HP15_p42g25 0.40 +0.9
20,513 + HP15_p42g25 0.42 -0.3
20,513 + HP15_p42g25 0.42 +0.4
20,521 - HP15_p42g25 0.43 +0.2
20,521 - HP15_p42g25 0.43 -0.0
20,578 + HP15_p42g25 0.45 -1.6
20,578 + HP15_p42g25 0.45 +1.3
20,606 + HP15_p42g25 0.47 -0.6
20,611 + HP15_p42g25 0.47 +0.4

Or see this region's nucleotide sequence