Strain Fitness in Marinobacter adhaerens HP15 around HP15_4113

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4112 and HP15_4113 are separated by 294 nucleotidesHP15_4113 and HP15_4114 overlap by 4 nucleotidesHP15_4114 and HP15_4115 are separated by 94 nucleotides HP15_4112: HP15_4112 - methyl-accepting chemotaxis protein, at 4,346,502 to 4,348,427 _4112 HP15_4113: HP15_4113 - hypothetical protein, at 4,348,722 to 4,349,315 _4113 HP15_4114: HP15_4114 - hypothetical protein, at 4,349,312 to 4,349,563 _4114 HP15_4115: HP15_4115 - sensory box/GGDEF/EAL family protein, at 4,349,658 to 4,352,093 _4115 Position (kb) 4348 4349 4350Strain fitness (log2 ratio) -2 -1 0 1 2at 4347.723 kb on - strand, within HP15_4112at 4347.771 kb on + strand, within HP15_4112at 4347.779 kb on - strand, within HP15_4112at 4347.783 kb on + strand, within HP15_4112at 4347.807 kb on - strand, within HP15_4112at 4347.862 kb on - strand, within HP15_4112at 4347.879 kb on + strand, within HP15_4112at 4347.897 kb on - strand, within HP15_4112at 4347.974 kb on + strand, within HP15_4112at 4348.035 kb on + strand, within HP15_4112at 4348.035 kb on + strand, within HP15_4112at 4348.043 kb on - strand, within HP15_4112at 4348.043 kb on - strand, within HP15_4112at 4348.082 kb on + strand, within HP15_4112at 4348.090 kb on - strand, within HP15_4112at 4348.174 kb on + strand, within HP15_4112at 4348.312 kb on - strandat 4348.380 kb on - strandat 4348.458 kb on + strandat 4348.460 kb on + strandat 4348.468 kb on - strandat 4348.585 kb on - strandat 4348.987 kb on + strand, within HP15_4113at 4349.047 kb on - strand, within HP15_4113at 4349.047 kb on - strand, within HP15_4113at 4349.125 kb on - strand, within HP15_4113at 4349.135 kb on + strand, within HP15_4113at 4349.278 kb on + strandat 4349.278 kb on + strandat 4349.303 kb on - strandat 4349.316 kb on + strandat 4349.409 kb on - strand, within HP15_4114at 4349.429 kb on + strand, within HP15_4114at 4349.445 kb on + strand, within HP15_4114at 4349.453 kb on - strand, within HP15_4114at 4349.590 kb on - strandat 4349.607 kb on - strandat 4349.648 kb on - strandat 4349.733 kb on + strandat 4349.782 kb on + strandat 4349.998 kb on - strand, within HP15_4115at 4350.107 kb on - strand, within HP15_4115at 4350.283 kb on + strand, within HP15_4115at 4350.291 kb on - strand, within HP15_4115at 4350.291 kb on - strand, within HP15_4115

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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4,347,723 - HP15_4112 0.63 +1.2
4,347,771 + HP15_4112 0.66 +1.1
4,347,779 - HP15_4112 0.66 +2.0
4,347,783 + HP15_4112 0.67 +0.9
4,347,807 - HP15_4112 0.68 +0.1
4,347,862 - HP15_4112 0.71 +1.4
4,347,879 + HP15_4112 0.71 -0.8
4,347,897 - HP15_4112 0.72 -0.2
4,347,974 + HP15_4112 0.76 +0.4
4,348,035 + HP15_4112 0.80 -0.2
4,348,035 + HP15_4112 0.80 +1.1
4,348,043 - HP15_4112 0.80 -2.7
4,348,043 - HP15_4112 0.80 -0.4
4,348,082 + HP15_4112 0.82 -0.8
4,348,090 - HP15_4112 0.82 +0.7
4,348,174 + HP15_4112 0.87 -0.4
4,348,312 - +0.8
4,348,380 - -1.5
4,348,458 + -1.3
4,348,460 + +0.4
4,348,468 - +1.0
4,348,585 - +1.8
4,348,987 + HP15_4113 0.45 -0.0
4,349,047 - HP15_4113 0.55 +0.1
4,349,047 - HP15_4113 0.55 +0.3
4,349,125 - HP15_4113 0.68 -1.9
4,349,135 + HP15_4113 0.70 -2.0
4,349,278 + -0.1
4,349,278 + -1.7
4,349,303 - -0.0
4,349,316 + +1.5
4,349,409 - HP15_4114 0.38 -0.3
4,349,429 + HP15_4114 0.46 -1.2
4,349,445 + HP15_4114 0.53 -0.1
4,349,453 - HP15_4114 0.56 -1.4
4,349,590 - +1.4
4,349,607 - +0.2
4,349,648 - +0.0
4,349,733 + -0.2
4,349,782 + +0.8
4,349,998 - HP15_4115 0.14 +0.6
4,350,107 - HP15_4115 0.18 +0.0
4,350,283 + HP15_4115 0.26 -0.7
4,350,291 - HP15_4115 0.26 -2.0
4,350,291 - HP15_4115 0.26 -0.4

Or see this region's nucleotide sequence