Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3376 and HP15_3377 are separated by 16 nucleotides HP15_3377 and HP15_3378 are separated by 219 nucleotides
HP15_3376: HP15_3376 - RNA polymerase-associated protein RapA, at 3,543,307 to 3,546,168
_3376
HP15_3377: HP15_3377 - sulfate transport protein CysZ, at 3,546,185 to 3,546,811
_3377
HP15_3378: HP15_3378 - VanZ family protein, at 3,547,031 to 3,547,435
_3378
Position (kb)
3546
3547 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3545.204 kb on - strand, within HP15_3376 at 3545.235 kb on + strand, within HP15_3376 at 3545.250 kb on + strand, within HP15_3376 at 3545.250 kb on + strand, within HP15_3376 at 3545.250 kb on + strand, within HP15_3376 at 3545.258 kb on - strand, within HP15_3376 at 3545.290 kb on + strand, within HP15_3376 at 3545.306 kb on + strand, within HP15_3376 at 3545.314 kb on - strand, within HP15_3376 at 3545.358 kb on - strand, within HP15_3376 at 3545.496 kb on + strand, within HP15_3376 at 3545.504 kb on - strand, within HP15_3376 at 3545.739 kb on - strand, within HP15_3376 at 3545.897 kb on - strand at 3545.897 kb on - strand at 3545.932 kb on + strand at 3545.932 kb on + strand at 3545.940 kb on - strand at 3546.010 kb on - strand at 3546.069 kb on - strand at 3546.131 kb on + strand at 3546.224 kb on - strand at 3546.228 kb on + strand at 3546.318 kb on - strand, within HP15_3377 at 3546.480 kb on + strand, within HP15_3377 at 3546.517 kb on - strand, within HP15_3377 at 3546.580 kb on + strand, within HP15_3377 at 3546.581 kb on - strand, within HP15_3377 at 3546.701 kb on - strand, within HP15_3377 at 3546.856 kb on + strand at 3546.946 kb on - strand at 3546.970 kb on + strand at 3547.002 kb on - strand at 3547.038 kb on + strand at 3547.063 kb on + strand at 3547.092 kb on + strand, within HP15_3378 at 3547.126 kb on + strand, within HP15_3378 at 3547.259 kb on + strand, within HP15_3378 at 3547.269 kb on + strand, within HP15_3378 at 3547.269 kb on + strand, within HP15_3378 at 3547.375 kb on - strand, within HP15_3378 at 3547.385 kb on + strand, within HP15_3378 at 3547.578 kb on + strand at 3547.578 kb on + strand at 3547.586 kb on - strand at 3547.586 kb on - strand at 3547.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 3,545,204 - HP15_3376 0.66 -0.3 3,545,235 + HP15_3376 0.67 -1.0 3,545,250 + HP15_3376 0.68 +0.2 3,545,250 + HP15_3376 0.68 -1.4 3,545,250 + HP15_3376 0.68 -1.2 3,545,258 - HP15_3376 0.68 -2.3 3,545,290 + HP15_3376 0.69 -2.8 3,545,306 + HP15_3376 0.70 -2.5 3,545,314 - HP15_3376 0.70 -1.7 3,545,358 - HP15_3376 0.72 -2.3 3,545,496 + HP15_3376 0.76 -2.2 3,545,504 - HP15_3376 0.77 -2.2 3,545,739 - HP15_3376 0.85 -2.3 3,545,897 - -2.6 3,545,897 - -0.6 3,545,932 + -1.8 3,545,932 + -2.4 3,545,940 - -3.0 3,546,010 - -1.4 3,546,069 - -1.7 3,546,131 + -0.7 3,546,224 - -1.9 3,546,228 + -3.4 3,546,318 - HP15_3377 0.21 -1.2 3,546,480 + HP15_3377 0.47 -2.5 3,546,517 - HP15_3377 0.53 -1.1 3,546,580 + HP15_3377 0.63 -2.0 3,546,581 - HP15_3377 0.63 -0.7 3,546,701 - HP15_3377 0.82 -2.1 3,546,856 + -4.0 3,546,946 - +0.6 3,546,970 + -1.1 3,547,002 - -0.1 3,547,038 + +0.0 3,547,063 + -0.1 3,547,092 + HP15_3378 0.15 -1.1 3,547,126 + HP15_3378 0.23 -1.5 3,547,259 + HP15_3378 0.56 -0.1 3,547,269 + HP15_3378 0.59 +0.2 3,547,269 + HP15_3378 0.59 +0.5 3,547,375 - HP15_3378 0.85 +0.3 3,547,385 + HP15_3378 0.87 +0.4 3,547,578 + -1.0 3,547,578 + +0.4 3,547,586 - -0.5 3,547,586 - +2.8 3,547,807 - -0.9
Or see this region's nucleotide sequence