Strain Fitness in Marinobacter adhaerens HP15 around HP15_3331

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3329 and HP15_3330 are separated by 169 nucleotidesHP15_3330 and HP15_3331 are separated by 28 nucleotidesHP15_3331 and HP15_3332 are separated by 258 nucleotidesHP15_3332 and HP15_3333 are separated by 60 nucleotides HP15_3329: HP15_3329 - NAD-dependent aldehyde dehydrogenase, at 3,488,828 to 3,490,273 _3329 HP15_3330: HP15_3330 - conserved hypothetical protein, at 3,490,443 to 3,491,081 _3330 HP15_3331: HP15_3331 - oxidoreductase, GMC family, at 3,491,110 to 3,492,699 _3331 HP15_3332: HP15_3332 - phosphopantetheine adenylyltransferase, at 3,492,958 to 3,493,434 _3332 HP15_3333: HP15_3333 - membrane protein YdgA-like protein, at 3,493,495 to 3,494,784 _3333 Position (kb) 3491 3492 3493Strain fitness (log2 ratio) -1 0 1at 3490.158 kb on - strandat 3490.233 kb on - strandat 3490.320 kb on + strandat 3490.365 kb on - strandat 3490.438 kb on + strandat 3490.586 kb on + strand, within HP15_3330at 3490.627 kb on + strand, within HP15_3330at 3490.670 kb on + strand, within HP15_3330at 3490.678 kb on - strand, within HP15_3330at 3490.826 kb on + strand, within HP15_3330at 3490.855 kb on - strand, within HP15_3330at 3490.857 kb on + strand, within HP15_3330at 3490.870 kb on - strand, within HP15_3330at 3490.941 kb on + strand, within HP15_3330at 3490.965 kb on - strand, within HP15_3330at 3491.027 kb on + strandat 3491.035 kb on - strandat 3491.035 kb on - strandat 3491.035 kb on - strandat 3491.248 kb on - strandat 3491.362 kb on + strand, within HP15_3331at 3491.370 kb on - strand, within HP15_3331at 3491.385 kb on - strand, within HP15_3331at 3491.440 kb on - strand, within HP15_3331at 3491.697 kb on - strand, within HP15_3331at 3491.704 kb on + strand, within HP15_3331at 3491.932 kb on - strand, within HP15_3331at 3492.142 kb on + strand, within HP15_3331at 3492.183 kb on + strand, within HP15_3331at 3492.214 kb on - strand, within HP15_3331at 3492.234 kb on - strand, within HP15_3331at 3492.239 kb on - strand, within HP15_3331at 3492.298 kb on + strand, within HP15_3331at 3492.303 kb on + strand, within HP15_3331at 3492.306 kb on - strand, within HP15_3331at 3492.311 kb on - strand, within HP15_3331at 3492.327 kb on + strand, within HP15_3331at 3492.346 kb on + strand, within HP15_3331at 3492.354 kb on - strand, within HP15_3331at 3492.531 kb on - strand, within HP15_3331at 3492.562 kb on + strandat 3492.578 kb on - strandat 3492.615 kb on + strandat 3492.626 kb on + strandat 3492.653 kb on - strandat 3492.681 kb on + strandat 3492.693 kb on + strandat 3492.701 kb on - strandat 3493.493 kb on + strandat 3493.542 kb on - strandat 3493.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,490,158 - +0.3
3,490,233 - -1.6
3,490,320 + -0.2
3,490,365 - -1.4
3,490,438 + +0.3
3,490,586 + HP15_3330 0.22 +1.3
3,490,627 + HP15_3330 0.29 -0.1
3,490,670 + HP15_3330 0.36 +0.3
3,490,678 - HP15_3330 0.37 +0.3
3,490,826 + HP15_3330 0.60 +0.3
3,490,855 - HP15_3330 0.64 +0.4
3,490,857 + HP15_3330 0.65 -0.5
3,490,870 - HP15_3330 0.67 +0.2
3,490,941 + HP15_3330 0.78 +0.3
3,490,965 - HP15_3330 0.82 +0.3
3,491,027 + +0.3
3,491,035 - +0.2
3,491,035 - -0.1
3,491,035 - -0.6
3,491,248 - -1.6
3,491,362 + HP15_3331 0.16 -0.0
3,491,370 - HP15_3331 0.16 +0.2
3,491,385 - HP15_3331 0.17 +1.0
3,491,440 - HP15_3331 0.21 -1.2
3,491,697 - HP15_3331 0.37 +0.4
3,491,704 + HP15_3331 0.37 -1.7
3,491,932 - HP15_3331 0.52 +0.1
3,492,142 + HP15_3331 0.65 +0.4
3,492,183 + HP15_3331 0.67 -0.6
3,492,214 - HP15_3331 0.69 -0.7
3,492,234 - HP15_3331 0.71 -0.2
3,492,239 - HP15_3331 0.71 -1.1
3,492,298 + HP15_3331 0.75 -0.2
3,492,303 + HP15_3331 0.75 +0.2
3,492,306 - HP15_3331 0.75 -0.8
3,492,311 - HP15_3331 0.76 -1.0
3,492,327 + HP15_3331 0.77 -0.5
3,492,346 + HP15_3331 0.78 +1.0
3,492,354 - HP15_3331 0.78 -0.2
3,492,531 - HP15_3331 0.89 +0.3
3,492,562 + +0.2
3,492,578 - -1.0
3,492,615 + -0.2
3,492,626 + +1.0
3,492,653 - +0.3
3,492,681 + +0.4
3,492,693 + +0.1
3,492,701 - +1.1
3,493,493 + +0.6
3,493,542 - +0.7
3,493,591 - -0.0

Or see this region's nucleotide sequence