Strain Fitness in Marinobacter adhaerens HP15 around HP15_3329

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3328 and HP15_3329 are separated by 192 nucleotidesHP15_3329 and HP15_3330 are separated by 169 nucleotidesHP15_3330 and HP15_3331 are separated by 28 nucleotides HP15_3328: HP15_3328 - transcriptional regulator, TetR family, at 3,487,886 to 3,488,635 _3328 HP15_3329: HP15_3329 - NAD-dependent aldehyde dehydrogenase, at 3,488,828 to 3,490,273 _3329 HP15_3330: HP15_3330 - conserved hypothetical protein, at 3,490,443 to 3,491,081 _3330 HP15_3331: HP15_3331 - oxidoreductase, GMC family, at 3,491,110 to 3,492,699 _3331 Position (kb) 3488 3489 3490 3491Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3487.897 kb on - strandat 3487.906 kb on - strandat 3488.125 kb on - strand, within HP15_3328at 3488.134 kb on + strand, within HP15_3328at 3488.166 kb on + strand, within HP15_3328at 3488.308 kb on - strand, within HP15_3328at 3488.341 kb on - strand, within HP15_3328at 3488.391 kb on + strand, within HP15_3328at 3488.519 kb on - strand, within HP15_3328at 3488.578 kb on + strandat 3488.978 kb on - strand, within HP15_3329at 3489.114 kb on + strand, within HP15_3329at 3489.138 kb on + strand, within HP15_3329at 3489.148 kb on + strand, within HP15_3329at 3489.156 kb on - strand, within HP15_3329at 3489.181 kb on + strand, within HP15_3329at 3489.181 kb on + strand, within HP15_3329at 3489.189 kb on - strand, within HP15_3329at 3489.196 kb on - strand, within HP15_3329at 3489.307 kb on + strand, within HP15_3329at 3489.309 kb on + strand, within HP15_3329at 3489.309 kb on + strand, within HP15_3329at 3489.310 kb on - strand, within HP15_3329at 3489.317 kb on - strand, within HP15_3329at 3489.317 kb on - strand, within HP15_3329at 3489.405 kb on - strand, within HP15_3329at 3489.495 kb on + strand, within HP15_3329at 3489.495 kb on + strand, within HP15_3329at 3489.503 kb on - strand, within HP15_3329at 3489.516 kb on - strand, within HP15_3329at 3489.529 kb on - strand, within HP15_3329at 3489.593 kb on + strand, within HP15_3329at 3489.615 kb on + strand, within HP15_3329at 3489.727 kb on - strand, within HP15_3329at 3489.799 kb on + strand, within HP15_3329at 3489.799 kb on + strand, within HP15_3329at 3489.799 kb on + strand, within HP15_3329at 3489.976 kb on + strand, within HP15_3329at 3490.018 kb on + strand, within HP15_3329at 3490.042 kb on + strand, within HP15_3329at 3490.042 kb on + strand, within HP15_3329at 3490.044 kb on - strand, within HP15_3329at 3490.050 kb on - strand, within HP15_3329at 3490.050 kb on - strand, within HP15_3329at 3490.050 kb on - strand, within HP15_3329at 3490.065 kb on - strand, within HP15_3329at 3490.158 kb on - strandat 3490.233 kb on - strandat 3490.320 kb on + strandat 3490.365 kb on - strandat 3490.438 kb on + strandat 3490.586 kb on + strand, within HP15_3330at 3490.627 kb on + strand, within HP15_3330at 3490.670 kb on + strand, within HP15_3330at 3490.678 kb on - strand, within HP15_3330at 3490.826 kb on + strand, within HP15_3330at 3490.855 kb on - strand, within HP15_3330at 3490.857 kb on + strand, within HP15_3330at 3490.870 kb on - strand, within HP15_3330at 3490.941 kb on + strand, within HP15_3330at 3490.965 kb on - strand, within HP15_3330at 3491.027 kb on + strandat 3491.035 kb on - strandat 3491.035 kb on - strandat 3491.035 kb on - strandat 3491.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,487,897 - +0.9
3,487,906 - +0.0
3,488,125 - HP15_3328 0.32 +0.3
3,488,134 + HP15_3328 0.33 -0.2
3,488,166 + HP15_3328 0.37 +0.0
3,488,308 - HP15_3328 0.56 +0.1
3,488,341 - HP15_3328 0.61 +0.0
3,488,391 + HP15_3328 0.67 -1.6
3,488,519 - HP15_3328 0.84 -0.2
3,488,578 + +0.1
3,488,978 - HP15_3329 0.10 +0.7
3,489,114 + HP15_3329 0.20 +0.1
3,489,138 + HP15_3329 0.21 -0.3
3,489,148 + HP15_3329 0.22 +0.2
3,489,156 - HP15_3329 0.23 +0.6
3,489,181 + HP15_3329 0.24 +0.2
3,489,181 + HP15_3329 0.24 -1.8
3,489,189 - HP15_3329 0.25 +0.2
3,489,196 - HP15_3329 0.25 -0.2
3,489,307 + HP15_3329 0.33 +0.5
3,489,309 + HP15_3329 0.33 +0.5
3,489,309 + HP15_3329 0.33 -1.1
3,489,310 - HP15_3329 0.33 +1.4
3,489,317 - HP15_3329 0.34 +1.0
3,489,317 - HP15_3329 0.34 +0.5
3,489,405 - HP15_3329 0.40 +1.4
3,489,495 + HP15_3329 0.46 +0.2
3,489,495 + HP15_3329 0.46 +3.3
3,489,503 - HP15_3329 0.47 +0.3
3,489,516 - HP15_3329 0.48 -2.1
3,489,529 - HP15_3329 0.48 -1.0
3,489,593 + HP15_3329 0.53 +0.1
3,489,615 + HP15_3329 0.54 +0.6
3,489,727 - HP15_3329 0.62 -0.4
3,489,799 + HP15_3329 0.67 +0.8
3,489,799 + HP15_3329 0.67 +0.3
3,489,799 + HP15_3329 0.67 +0.5
3,489,976 + HP15_3329 0.79 +1.1
3,490,018 + HP15_3329 0.82 -1.6
3,490,042 + HP15_3329 0.84 +1.3
3,490,042 + HP15_3329 0.84 +0.1
3,490,044 - HP15_3329 0.84 -0.8
3,490,050 - HP15_3329 0.85 +0.7
3,490,050 - HP15_3329 0.85 +0.7
3,490,050 - HP15_3329 0.85 -0.3
3,490,065 - HP15_3329 0.86 -0.0
3,490,158 - +0.3
3,490,233 - -1.6
3,490,320 + -0.2
3,490,365 - -1.4
3,490,438 + +0.3
3,490,586 + HP15_3330 0.22 +1.3
3,490,627 + HP15_3330 0.29 -0.1
3,490,670 + HP15_3330 0.36 +0.3
3,490,678 - HP15_3330 0.37 +0.3
3,490,826 + HP15_3330 0.60 +0.3
3,490,855 - HP15_3330 0.64 +0.4
3,490,857 + HP15_3330 0.65 -0.5
3,490,870 - HP15_3330 0.67 +0.2
3,490,941 + HP15_3330 0.78 +0.3
3,490,965 - HP15_3330 0.82 +0.3
3,491,027 + +0.3
3,491,035 - +0.2
3,491,035 - -0.1
3,491,035 - -0.6
3,491,248 - -1.6

Or see this region's nucleotide sequence