Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3328 and HP15_3329 are separated by 192 nucleotides HP15_3329 and HP15_3330 are separated by 169 nucleotides HP15_3330 and HP15_3331 are separated by 28 nucleotides
HP15_3328: HP15_3328 - transcriptional regulator, TetR family, at 3,487,886 to 3,488,635
_3328
HP15_3329: HP15_3329 - NAD-dependent aldehyde dehydrogenase, at 3,488,828 to 3,490,273
_3329
HP15_3330: HP15_3330 - conserved hypothetical protein, at 3,490,443 to 3,491,081
_3330
HP15_3331: HP15_3331 - oxidoreductase, GMC family, at 3,491,110 to 3,492,699
_3331
Position (kb)
3488
3489
3490
3491 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3487.897 kb on - strand at 3487.906 kb on - strand at 3488.125 kb on - strand, within HP15_3328 at 3488.134 kb on + strand, within HP15_3328 at 3488.166 kb on + strand, within HP15_3328 at 3488.308 kb on - strand, within HP15_3328 at 3488.341 kb on - strand, within HP15_3328 at 3488.391 kb on + strand, within HP15_3328 at 3488.519 kb on - strand, within HP15_3328 at 3488.578 kb on + strand at 3488.978 kb on - strand, within HP15_3329 at 3489.114 kb on + strand, within HP15_3329 at 3489.138 kb on + strand, within HP15_3329 at 3489.148 kb on + strand, within HP15_3329 at 3489.156 kb on - strand, within HP15_3329 at 3489.181 kb on + strand, within HP15_3329 at 3489.181 kb on + strand, within HP15_3329 at 3489.189 kb on - strand, within HP15_3329 at 3489.196 kb on - strand, within HP15_3329 at 3489.307 kb on + strand, within HP15_3329 at 3489.309 kb on + strand, within HP15_3329 at 3489.309 kb on + strand, within HP15_3329 at 3489.310 kb on - strand, within HP15_3329 at 3489.317 kb on - strand, within HP15_3329 at 3489.317 kb on - strand, within HP15_3329 at 3489.405 kb on - strand, within HP15_3329 at 3489.495 kb on + strand, within HP15_3329 at 3489.495 kb on + strand, within HP15_3329 at 3489.503 kb on - strand, within HP15_3329 at 3489.516 kb on - strand, within HP15_3329 at 3489.529 kb on - strand, within HP15_3329 at 3489.593 kb on + strand, within HP15_3329 at 3489.615 kb on + strand, within HP15_3329 at 3489.727 kb on - strand, within HP15_3329 at 3489.799 kb on + strand, within HP15_3329 at 3489.799 kb on + strand, within HP15_3329 at 3489.799 kb on + strand, within HP15_3329 at 3489.976 kb on + strand, within HP15_3329 at 3490.018 kb on + strand, within HP15_3329 at 3490.042 kb on + strand, within HP15_3329 at 3490.042 kb on + strand, within HP15_3329 at 3490.044 kb on - strand, within HP15_3329 at 3490.050 kb on - strand, within HP15_3329 at 3490.050 kb on - strand, within HP15_3329 at 3490.050 kb on - strand, within HP15_3329 at 3490.065 kb on - strand, within HP15_3329 at 3490.158 kb on - strand at 3490.233 kb on - strand at 3490.320 kb on + strand at 3490.365 kb on - strand at 3490.438 kb on + strand at 3490.586 kb on + strand, within HP15_3330 at 3490.627 kb on + strand, within HP15_3330 at 3490.670 kb on + strand, within HP15_3330 at 3490.678 kb on - strand, within HP15_3330 at 3490.826 kb on + strand, within HP15_3330 at 3490.855 kb on - strand, within HP15_3330 at 3490.857 kb on + strand, within HP15_3330 at 3490.870 kb on - strand, within HP15_3330 at 3490.941 kb on + strand, within HP15_3330 at 3490.965 kb on - strand, within HP15_3330 at 3491.027 kb on + strand at 3491.035 kb on - strand at 3491.035 kb on - strand at 3491.035 kb on - strand at 3491.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 3,487,897 - +0.9 3,487,906 - +0.0 3,488,125 - HP15_3328 0.32 +0.3 3,488,134 + HP15_3328 0.33 -0.2 3,488,166 + HP15_3328 0.37 +0.0 3,488,308 - HP15_3328 0.56 +0.1 3,488,341 - HP15_3328 0.61 +0.0 3,488,391 + HP15_3328 0.67 -1.6 3,488,519 - HP15_3328 0.84 -0.2 3,488,578 + +0.1 3,488,978 - HP15_3329 0.10 +0.7 3,489,114 + HP15_3329 0.20 +0.1 3,489,138 + HP15_3329 0.21 -0.3 3,489,148 + HP15_3329 0.22 +0.2 3,489,156 - HP15_3329 0.23 +0.6 3,489,181 + HP15_3329 0.24 +0.2 3,489,181 + HP15_3329 0.24 -1.8 3,489,189 - HP15_3329 0.25 +0.2 3,489,196 - HP15_3329 0.25 -0.2 3,489,307 + HP15_3329 0.33 +0.5 3,489,309 + HP15_3329 0.33 +0.5 3,489,309 + HP15_3329 0.33 -1.1 3,489,310 - HP15_3329 0.33 +1.4 3,489,317 - HP15_3329 0.34 +1.0 3,489,317 - HP15_3329 0.34 +0.5 3,489,405 - HP15_3329 0.40 +1.4 3,489,495 + HP15_3329 0.46 +0.2 3,489,495 + HP15_3329 0.46 +3.3 3,489,503 - HP15_3329 0.47 +0.3 3,489,516 - HP15_3329 0.48 -2.1 3,489,529 - HP15_3329 0.48 -1.0 3,489,593 + HP15_3329 0.53 +0.1 3,489,615 + HP15_3329 0.54 +0.6 3,489,727 - HP15_3329 0.62 -0.4 3,489,799 + HP15_3329 0.67 +0.8 3,489,799 + HP15_3329 0.67 +0.3 3,489,799 + HP15_3329 0.67 +0.5 3,489,976 + HP15_3329 0.79 +1.1 3,490,018 + HP15_3329 0.82 -1.6 3,490,042 + HP15_3329 0.84 +1.3 3,490,042 + HP15_3329 0.84 +0.1 3,490,044 - HP15_3329 0.84 -0.8 3,490,050 - HP15_3329 0.85 +0.7 3,490,050 - HP15_3329 0.85 +0.7 3,490,050 - HP15_3329 0.85 -0.3 3,490,065 - HP15_3329 0.86 -0.0 3,490,158 - +0.3 3,490,233 - -1.6 3,490,320 + -0.2 3,490,365 - -1.4 3,490,438 + +0.3 3,490,586 + HP15_3330 0.22 +1.3 3,490,627 + HP15_3330 0.29 -0.1 3,490,670 + HP15_3330 0.36 +0.3 3,490,678 - HP15_3330 0.37 +0.3 3,490,826 + HP15_3330 0.60 +0.3 3,490,855 - HP15_3330 0.64 +0.4 3,490,857 + HP15_3330 0.65 -0.5 3,490,870 - HP15_3330 0.67 +0.2 3,490,941 + HP15_3330 0.78 +0.3 3,490,965 - HP15_3330 0.82 +0.3 3,491,027 + +0.3 3,491,035 - +0.2 3,491,035 - -0.1 3,491,035 - -0.6 3,491,248 - -1.6
Or see this region's nucleotide sequence