Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31210

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c31190 and PGA1_c31200 are separated by 70 nucleotidesPGA1_c31200 and PGA1_c31210 overlap by 4 nucleotidesPGA1_c31210 and PGA1_c31220 overlap by 1 nucleotides PGA1_c31190: PGA1_c31190 - histidinol dehydrogenase HisD, at 3,255,459 to 3,256,760 _c31190 PGA1_c31200: PGA1_c31200 - putative acetyltransferase, at 3,256,831 to 3,257,373 _c31200 PGA1_c31210: PGA1_c31210 - Protein of unknown function (DUF2948)., at 3,257,370 to 3,257,846 _c31210 PGA1_c31220: PGA1_c31220 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA, at 3,257,846 to 3,259,117 _c31220 Position (kb) 3257 3258Strain fitness (log2 ratio) -3 -2 -1 0 1at 3256.789 kb on - strandat 3256.792 kb on - strandat 3256.803 kb on + strandat 3256.880 kb on + strandat 3256.880 kb on + strandat 3256.880 kb on + strandat 3256.888 kb on - strand, within PGA1_c31200at 3256.927 kb on + strand, within PGA1_c31200at 3256.940 kb on + strand, within PGA1_c31200at 3256.940 kb on - strand, within PGA1_c31200at 3256.940 kb on - strand, within PGA1_c31200at 3256.948 kb on - strand, within PGA1_c31200at 3256.953 kb on + strand, within PGA1_c31200at 3256.986 kb on + strand, within PGA1_c31200at 3257.031 kb on + strand, within PGA1_c31200at 3257.031 kb on + strand, within PGA1_c31200at 3257.039 kb on - strand, within PGA1_c31200at 3257.039 kb on - strand, within PGA1_c31200at 3257.039 kb on - strand, within PGA1_c31200at 3257.039 kb on - strand, within PGA1_c31200at 3257.039 kb on - strand, within PGA1_c31200at 3257.039 kb on - strand, within PGA1_c31200at 3257.039 kb on - strand, within PGA1_c31200at 3257.057 kb on + strand, within PGA1_c31200at 3257.057 kb on + strand, within PGA1_c31200at 3257.057 kb on + strand, within PGA1_c31200at 3257.057 kb on + strand, within PGA1_c31200at 3257.057 kb on + strand, within PGA1_c31200at 3257.057 kb on + strand, within PGA1_c31200at 3257.057 kb on + strand, within PGA1_c31200at 3257.057 kb on + strand, within PGA1_c31200at 3257.065 kb on - strand, within PGA1_c31200at 3257.065 kb on - strand, within PGA1_c31200at 3257.065 kb on - strand, within PGA1_c31200at 3257.078 kb on + strand, within PGA1_c31200at 3257.090 kb on + strand, within PGA1_c31200at 3257.130 kb on + strand, within PGA1_c31200at 3257.148 kb on - strand, within PGA1_c31200at 3257.156 kb on + strand, within PGA1_c31200at 3257.164 kb on - strand, within PGA1_c31200at 3257.175 kb on + strand, within PGA1_c31200at 3257.198 kb on + strand, within PGA1_c31200at 3257.222 kb on - strand, within PGA1_c31200at 3257.242 kb on - strand, within PGA1_c31200at 3257.271 kb on + strand, within PGA1_c31200at 3257.279 kb on - strand, within PGA1_c31200at 3257.313 kb on - strand, within PGA1_c31200at 3257.313 kb on - strand, within PGA1_c31200at 3257.432 kb on + strand, within PGA1_c31210at 3257.484 kb on + strand, within PGA1_c31210at 3257.519 kb on + strand, within PGA1_c31210at 3257.519 kb on + strand, within PGA1_c31210at 3257.519 kb on + strand, within PGA1_c31210at 3257.569 kb on - strand, within PGA1_c31210at 3257.625 kb on - strand, within PGA1_c31210at 3257.681 kb on + strand, within PGA1_c31210at 3257.786 kb on + strand, within PGA1_c31210at 3257.793 kb on - strand, within PGA1_c31210at 3257.850 kb on - strandat 3257.870 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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3,256,789 - +0.2
3,256,792 - +1.1
3,256,803 + -0.8
3,256,880 + -0.0
3,256,880 + -0.3
3,256,880 + -0.1
3,256,888 - PGA1_c31200 0.10 -0.4
3,256,927 + PGA1_c31200 0.18 +0.9
3,256,940 + PGA1_c31200 0.20 +1.2
3,256,940 - PGA1_c31200 0.20 +0.3
3,256,940 - PGA1_c31200 0.20 -0.5
3,256,948 - PGA1_c31200 0.22 -0.0
3,256,953 + PGA1_c31200 0.22 +1.1
3,256,986 + PGA1_c31200 0.29 -0.6
3,257,031 + PGA1_c31200 0.37 +0.3
3,257,031 + PGA1_c31200 0.37 -0.2
3,257,039 - PGA1_c31200 0.38 -0.0
3,257,039 - PGA1_c31200 0.38 -0.4
3,257,039 - PGA1_c31200 0.38 +0.4
3,257,039 - PGA1_c31200 0.38 -0.5
3,257,039 - PGA1_c31200 0.38 -1.1
3,257,039 - PGA1_c31200 0.38 +0.3
3,257,039 - PGA1_c31200 0.38 +0.2
3,257,057 + PGA1_c31200 0.42 -1.5
3,257,057 + PGA1_c31200 0.42 +0.8
3,257,057 + PGA1_c31200 0.42 +1.4
3,257,057 + PGA1_c31200 0.42 -0.4
3,257,057 + PGA1_c31200 0.42 -0.9
3,257,057 + PGA1_c31200 0.42 +1.3
3,257,057 + PGA1_c31200 0.42 +1.1
3,257,057 + PGA1_c31200 0.42 +1.2
3,257,065 - PGA1_c31200 0.43 -0.3
3,257,065 - PGA1_c31200 0.43 +0.1
3,257,065 - PGA1_c31200 0.43 -2.2
3,257,078 + PGA1_c31200 0.45 +0.3
3,257,090 + PGA1_c31200 0.48 +0.3
3,257,130 + PGA1_c31200 0.55 -1.2
3,257,148 - PGA1_c31200 0.58 +0.1
3,257,156 + PGA1_c31200 0.60 +1.3
3,257,164 - PGA1_c31200 0.61 +0.8
3,257,175 + PGA1_c31200 0.63 +0.0
3,257,198 + PGA1_c31200 0.68 -0.6
3,257,222 - PGA1_c31200 0.72 -0.8
3,257,242 - PGA1_c31200 0.76 +0.6
3,257,271 + PGA1_c31200 0.81 -0.6
3,257,279 - PGA1_c31200 0.83 -2.5
3,257,313 - PGA1_c31200 0.89 +0.2
3,257,313 - PGA1_c31200 0.89 -1.0
3,257,432 + PGA1_c31210 0.13 -0.7
3,257,484 + PGA1_c31210 0.24 -2.4
3,257,519 + PGA1_c31210 0.31 -0.5
3,257,519 + PGA1_c31210 0.31 -1.6
3,257,519 + PGA1_c31210 0.31 -1.1
3,257,569 - PGA1_c31210 0.42 -0.5
3,257,625 - PGA1_c31210 0.53 -1.6
3,257,681 + PGA1_c31210 0.65 -1.3
3,257,786 + PGA1_c31210 0.87 -3.2
3,257,793 - PGA1_c31210 0.89 -2.7
3,257,850 - -0.6
3,257,870 - -2.6

Or see this region's nucleotide sequence