Strain Fitness in Marinobacter adhaerens HP15 around HP15_2958

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2956 and HP15_2957 overlap by 8 nucleotidesHP15_2957 and HP15_2958 are separated by 54 nucleotidesHP15_2958 and HP15_2959 are separated by 30 nucleotides HP15_2956: HP15_2956 - sugar ABC transporter, permease protein, at 3,099,784 to 3,100,653 _2956 HP15_2957: HP15_2957 - sugar ABC transporter, permease protein, at 3,100,646 to 3,101,572 _2957 HP15_2958: HP15_2958 - extracellular solute-binding protein family 1, at 3,101,627 to 3,102,877 _2958 HP15_2959: HP15_2959 - porin, LamB type, at 3,102,908 to 3,104,356 _2959 Position (kb) 3101 3102 3103Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3100.736 kb on + strandat 3100.736 kb on + strandat 3100.736 kb on + strandat 3100.756 kb on + strand, within HP15_2957at 3100.837 kb on + strand, within HP15_2957at 3100.845 kb on - strand, within HP15_2957at 3100.938 kb on - strand, within HP15_2957at 3100.975 kb on + strand, within HP15_2957at 3100.975 kb on + strand, within HP15_2957at 3101.051 kb on + strand, within HP15_2957at 3101.073 kb on - strand, within HP15_2957at 3101.131 kb on + strand, within HP15_2957at 3101.166 kb on + strand, within HP15_2957at 3101.166 kb on + strand, within HP15_2957at 3101.178 kb on + strand, within HP15_2957at 3101.188 kb on + strand, within HP15_2957at 3101.211 kb on - strand, within HP15_2957at 3101.334 kb on - strand, within HP15_2957at 3101.365 kb on + strand, within HP15_2957at 3101.427 kb on + strand, within HP15_2957at 3101.464 kb on + strand, within HP15_2957at 3101.590 kb on + strandat 3101.731 kb on + strandat 3101.734 kb on - strandat 3101.747 kb on + strandat 3101.803 kb on - strand, within HP15_2958at 3101.818 kb on + strand, within HP15_2958at 3101.829 kb on + strand, within HP15_2958at 3101.880 kb on + strand, within HP15_2958at 3101.880 kb on + strand, within HP15_2958at 3101.888 kb on - strand, within HP15_2958at 3101.944 kb on - strand, within HP15_2958at 3101.976 kb on - strand, within HP15_2958at 3102.025 kb on - strand, within HP15_2958at 3102.025 kb on - strand, within HP15_2958at 3102.060 kb on + strand, within HP15_2958at 3102.060 kb on + strand, within HP15_2958at 3102.068 kb on - strand, within HP15_2958at 3102.075 kb on + strand, within HP15_2958at 3102.083 kb on - strand, within HP15_2958at 3102.083 kb on - strand, within HP15_2958at 3102.083 kb on - strand, within HP15_2958at 3102.200 kb on - strand, within HP15_2958at 3102.207 kb on + strand, within HP15_2958at 3102.225 kb on - strand, within HP15_2958at 3102.326 kb on - strand, within HP15_2958at 3102.326 kb on - strand, within HP15_2958at 3102.345 kb on + strand, within HP15_2958at 3102.384 kb on + strand, within HP15_2958at 3102.384 kb on + strand, within HP15_2958at 3102.392 kb on - strand, within HP15_2958at 3102.402 kb on - strand, within HP15_2958at 3102.402 kb on - strand, within HP15_2958at 3102.464 kb on - strand, within HP15_2958at 3102.471 kb on + strand, within HP15_2958at 3102.608 kb on - strand, within HP15_2958at 3102.710 kb on + strand, within HP15_2958at 3102.776 kb on + strandat 3102.797 kb on + strandat 3102.875 kb on - strandat 3102.895 kb on + strandat 3103.173 kb on + strand, within HP15_2959at 3103.181 kb on - strand, within HP15_2959at 3103.200 kb on + strand, within HP15_2959at 3103.416 kb on - strand, within HP15_2959at 3103.431 kb on + strand, within HP15_2959at 3103.486 kb on - strand, within HP15_2959at 3103.787 kb on + strand, within HP15_2959at 3103.787 kb on + strand, within HP15_2959at 3103.795 kb on - strand, within HP15_2959at 3103.795 kb on - strand, within HP15_2959at 3103.810 kb on + strand, within HP15_2959

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,100,736 + +0.6
3,100,736 + +0.9
3,100,736 + -0.1
3,100,756 + HP15_2957 0.12 -0.1
3,100,837 + HP15_2957 0.21 -0.0
3,100,845 - HP15_2957 0.21 +0.3
3,100,938 - HP15_2957 0.31 +0.4
3,100,975 + HP15_2957 0.35 +0.3
3,100,975 + HP15_2957 0.35 +0.8
3,101,051 + HP15_2957 0.44 -2.4
3,101,073 - HP15_2957 0.46 -1.3
3,101,131 + HP15_2957 0.52 +2.0
3,101,166 + HP15_2957 0.56 -0.7
3,101,166 + HP15_2957 0.56 +0.5
3,101,178 + HP15_2957 0.57 -0.1
3,101,188 + HP15_2957 0.58 -0.1
3,101,211 - HP15_2957 0.61 -0.7
3,101,334 - HP15_2957 0.74 +0.5
3,101,365 + HP15_2957 0.78 +1.2
3,101,427 + HP15_2957 0.84 -0.6
3,101,464 + HP15_2957 0.88 -0.1
3,101,590 + +2.8
3,101,731 + -0.8
3,101,734 - +1.1
3,101,747 + +0.3
3,101,803 - HP15_2958 0.14 +0.2
3,101,818 + HP15_2958 0.15 -1.8
3,101,829 + HP15_2958 0.16 -0.4
3,101,880 + HP15_2958 0.20 -0.0
3,101,880 + HP15_2958 0.20 -0.3
3,101,888 - HP15_2958 0.21 +0.0
3,101,944 - HP15_2958 0.25 -0.3
3,101,976 - HP15_2958 0.28 -1.5
3,102,025 - HP15_2958 0.32 +0.6
3,102,025 - HP15_2958 0.32 -0.0
3,102,060 + HP15_2958 0.35 -1.9
3,102,060 + HP15_2958 0.35 +0.1
3,102,068 - HP15_2958 0.35 -0.1
3,102,075 + HP15_2958 0.36 -1.7
3,102,083 - HP15_2958 0.36 -0.3
3,102,083 - HP15_2958 0.36 -0.0
3,102,083 - HP15_2958 0.36 -2.0
3,102,200 - HP15_2958 0.46 +0.3
3,102,207 + HP15_2958 0.46 -0.3
3,102,225 - HP15_2958 0.48 +0.8
3,102,326 - HP15_2958 0.56 -1.1
3,102,326 - HP15_2958 0.56 -0.1
3,102,345 + HP15_2958 0.57 +0.5
3,102,384 + HP15_2958 0.61 +0.4
3,102,384 + HP15_2958 0.61 -0.1
3,102,392 - HP15_2958 0.61 -0.0
3,102,402 - HP15_2958 0.62 -0.2
3,102,402 - HP15_2958 0.62 -0.2
3,102,464 - HP15_2958 0.67 -0.1
3,102,471 + HP15_2958 0.67 +0.1
3,102,608 - HP15_2958 0.78 -1.7
3,102,710 + HP15_2958 0.87 -1.2
3,102,776 + -0.3
3,102,797 + -0.1
3,102,875 - +0.8
3,102,895 + +0.2
3,103,173 + HP15_2959 0.18 -0.7
3,103,181 - HP15_2959 0.19 +0.3
3,103,200 + HP15_2959 0.20 +0.5
3,103,416 - HP15_2959 0.35 -1.9
3,103,431 + HP15_2959 0.36 -0.3
3,103,486 - HP15_2959 0.40 -0.6
3,103,787 + HP15_2959 0.61 +0.2
3,103,787 + HP15_2959 0.61 +0.4
3,103,795 - HP15_2959 0.61 -0.1
3,103,795 - HP15_2959 0.61 -1.3
3,103,810 + HP15_2959 0.62 -1.6

Or see this region's nucleotide sequence