Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2956 and HP15_2957 overlap by 8 nucleotides HP15_2957 and HP15_2958 are separated by 54 nucleotides HP15_2958 and HP15_2959 are separated by 30 nucleotides
HP15_2956: HP15_2956 - sugar ABC transporter, permease protein, at 3,099,784 to 3,100,653
_2956
HP15_2957: HP15_2957 - sugar ABC transporter, permease protein, at 3,100,646 to 3,101,572
_2957
HP15_2958: HP15_2958 - extracellular solute-binding protein family 1, at 3,101,627 to 3,102,877
_2958
HP15_2959: HP15_2959 - porin, LamB type, at 3,102,908 to 3,104,356
_2959
Position (kb)
3101
3102
3103 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3100.736 kb on + strand at 3100.736 kb on + strand at 3100.736 kb on + strand at 3100.756 kb on + strand, within HP15_2957 at 3100.837 kb on + strand, within HP15_2957 at 3100.845 kb on - strand, within HP15_2957 at 3100.938 kb on - strand, within HP15_2957 at 3100.975 kb on + strand, within HP15_2957 at 3100.975 kb on + strand, within HP15_2957 at 3101.051 kb on + strand, within HP15_2957 at 3101.073 kb on - strand, within HP15_2957 at 3101.131 kb on + strand, within HP15_2957 at 3101.166 kb on + strand, within HP15_2957 at 3101.166 kb on + strand, within HP15_2957 at 3101.178 kb on + strand, within HP15_2957 at 3101.188 kb on + strand, within HP15_2957 at 3101.211 kb on - strand, within HP15_2957 at 3101.334 kb on - strand, within HP15_2957 at 3101.365 kb on + strand, within HP15_2957 at 3101.427 kb on + strand, within HP15_2957 at 3101.464 kb on + strand, within HP15_2957 at 3101.590 kb on + strand at 3101.731 kb on + strand at 3101.734 kb on - strand at 3101.747 kb on + strand at 3101.803 kb on - strand, within HP15_2958 at 3101.818 kb on + strand, within HP15_2958 at 3101.829 kb on + strand, within HP15_2958 at 3101.880 kb on + strand, within HP15_2958 at 3101.880 kb on + strand, within HP15_2958 at 3101.888 kb on - strand, within HP15_2958 at 3101.944 kb on - strand, within HP15_2958 at 3101.976 kb on - strand, within HP15_2958 at 3102.025 kb on - strand, within HP15_2958 at 3102.025 kb on - strand, within HP15_2958 at 3102.060 kb on + strand, within HP15_2958 at 3102.060 kb on + strand, within HP15_2958 at 3102.068 kb on - strand, within HP15_2958 at 3102.075 kb on + strand, within HP15_2958 at 3102.083 kb on - strand, within HP15_2958 at 3102.083 kb on - strand, within HP15_2958 at 3102.083 kb on - strand, within HP15_2958 at 3102.200 kb on - strand, within HP15_2958 at 3102.207 kb on + strand, within HP15_2958 at 3102.225 kb on - strand, within HP15_2958 at 3102.326 kb on - strand, within HP15_2958 at 3102.326 kb on - strand, within HP15_2958 at 3102.345 kb on + strand, within HP15_2958 at 3102.384 kb on + strand, within HP15_2958 at 3102.384 kb on + strand, within HP15_2958 at 3102.392 kb on - strand, within HP15_2958 at 3102.402 kb on - strand, within HP15_2958 at 3102.402 kb on - strand, within HP15_2958 at 3102.464 kb on - strand, within HP15_2958 at 3102.471 kb on + strand, within HP15_2958 at 3102.608 kb on - strand, within HP15_2958 at 3102.710 kb on + strand, within HP15_2958 at 3102.776 kb on + strand at 3102.797 kb on + strand at 3102.875 kb on - strand at 3102.895 kb on + strand at 3103.173 kb on + strand, within HP15_2959 at 3103.181 kb on - strand, within HP15_2959 at 3103.200 kb on + strand, within HP15_2959 at 3103.416 kb on - strand, within HP15_2959 at 3103.431 kb on + strand, within HP15_2959 at 3103.486 kb on - strand, within HP15_2959 at 3103.787 kb on + strand, within HP15_2959 at 3103.787 kb on + strand, within HP15_2959 at 3103.795 kb on - strand, within HP15_2959 at 3103.795 kb on - strand, within HP15_2959 at 3103.810 kb on + strand, within HP15_2959
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 3,100,736 + +0.6 3,100,736 + +0.9 3,100,736 + -0.1 3,100,756 + HP15_2957 0.12 -0.1 3,100,837 + HP15_2957 0.21 -0.0 3,100,845 - HP15_2957 0.21 +0.3 3,100,938 - HP15_2957 0.31 +0.4 3,100,975 + HP15_2957 0.35 +0.3 3,100,975 + HP15_2957 0.35 +0.8 3,101,051 + HP15_2957 0.44 -2.4 3,101,073 - HP15_2957 0.46 -1.3 3,101,131 + HP15_2957 0.52 +2.0 3,101,166 + HP15_2957 0.56 -0.7 3,101,166 + HP15_2957 0.56 +0.5 3,101,178 + HP15_2957 0.57 -0.1 3,101,188 + HP15_2957 0.58 -0.1 3,101,211 - HP15_2957 0.61 -0.7 3,101,334 - HP15_2957 0.74 +0.5 3,101,365 + HP15_2957 0.78 +1.2 3,101,427 + HP15_2957 0.84 -0.6 3,101,464 + HP15_2957 0.88 -0.1 3,101,590 + +2.8 3,101,731 + -0.8 3,101,734 - +1.1 3,101,747 + +0.3 3,101,803 - HP15_2958 0.14 +0.2 3,101,818 + HP15_2958 0.15 -1.8 3,101,829 + HP15_2958 0.16 -0.4 3,101,880 + HP15_2958 0.20 -0.0 3,101,880 + HP15_2958 0.20 -0.3 3,101,888 - HP15_2958 0.21 +0.0 3,101,944 - HP15_2958 0.25 -0.3 3,101,976 - HP15_2958 0.28 -1.5 3,102,025 - HP15_2958 0.32 +0.6 3,102,025 - HP15_2958 0.32 -0.0 3,102,060 + HP15_2958 0.35 -1.9 3,102,060 + HP15_2958 0.35 +0.1 3,102,068 - HP15_2958 0.35 -0.1 3,102,075 + HP15_2958 0.36 -1.7 3,102,083 - HP15_2958 0.36 -0.3 3,102,083 - HP15_2958 0.36 -0.0 3,102,083 - HP15_2958 0.36 -2.0 3,102,200 - HP15_2958 0.46 +0.3 3,102,207 + HP15_2958 0.46 -0.3 3,102,225 - HP15_2958 0.48 +0.8 3,102,326 - HP15_2958 0.56 -1.1 3,102,326 - HP15_2958 0.56 -0.1 3,102,345 + HP15_2958 0.57 +0.5 3,102,384 + HP15_2958 0.61 +0.4 3,102,384 + HP15_2958 0.61 -0.1 3,102,392 - HP15_2958 0.61 -0.0 3,102,402 - HP15_2958 0.62 -0.2 3,102,402 - HP15_2958 0.62 -0.2 3,102,464 - HP15_2958 0.67 -0.1 3,102,471 + HP15_2958 0.67 +0.1 3,102,608 - HP15_2958 0.78 -1.7 3,102,710 + HP15_2958 0.87 -1.2 3,102,776 + -0.3 3,102,797 + -0.1 3,102,875 - +0.8 3,102,895 + +0.2 3,103,173 + HP15_2959 0.18 -0.7 3,103,181 - HP15_2959 0.19 +0.3 3,103,200 + HP15_2959 0.20 +0.5 3,103,416 - HP15_2959 0.35 -1.9 3,103,431 + HP15_2959 0.36 -0.3 3,103,486 - HP15_2959 0.40 -0.6 3,103,787 + HP15_2959 0.61 +0.2 3,103,787 + HP15_2959 0.61 +0.4 3,103,795 - HP15_2959 0.61 -0.1 3,103,795 - HP15_2959 0.61 -1.3 3,103,810 + HP15_2959 0.62 -1.6
Or see this region's nucleotide sequence