Strain Fitness in Marinobacter adhaerens HP15 around HP15_2918

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2917 and HP15_2918 are separated by 250 nucleotidesHP15_2918 and HP15_2919 are separated by 91 nucleotidesHP15_2919 and HP15_2920 are separated by 13 nucleotides HP15_2917: HP15_2917 - 5,10-methylenetetrahydrofolate reductase-like protein, at 3,056,738 to 3,057,607 _2917 HP15_2918: HP15_2918 - glutamine ABC transporter, periplasmic glutamine-binding protein, at 3,057,858 to 3,058,616 _2918 HP15_2919: HP15_2919 - amino acid ABC transporter, permease protein, at 3,058,708 to 3,059,379 _2919 HP15_2920: HP15_2920 - amino acid ABC transporter, ATP-binding protein, at 3,059,393 to 3,060,139 _2920 Position (kb) 3057 3058 3059Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3056.892 kb on + strand, within HP15_2917at 3057.055 kb on + strand, within HP15_2917at 3057.070 kb on - strand, within HP15_2917at 3057.080 kb on + strand, within HP15_2917at 3057.143 kb on - strand, within HP15_2917at 3057.181 kb on - strand, within HP15_2917at 3057.220 kb on + strand, within HP15_2917at 3057.221 kb on + strand, within HP15_2917at 3057.229 kb on - strand, within HP15_2917at 3057.229 kb on - strand, within HP15_2917at 3057.229 kb on - strand, within HP15_2917at 3057.229 kb on - strand, within HP15_2917at 3057.229 kb on - strand, within HP15_2917at 3057.229 kb on - strand, within HP15_2917at 3057.248 kb on + strand, within HP15_2917at 3057.343 kb on - strand, within HP15_2917at 3057.387 kb on + strand, within HP15_2917at 3057.443 kb on + strand, within HP15_2917at 3057.493 kb on + strand, within HP15_2917at 3057.521 kb on + strandat 3057.539 kb on - strandat 3057.539 kb on - strandat 3057.654 kb on - strandat 3057.782 kb on - strandat 3057.886 kb on + strandat 3057.892 kb on + strandat 3058.069 kb on - strand, within HP15_2918at 3058.149 kb on - strand, within HP15_2918at 3058.287 kb on + strand, within HP15_2918at 3058.287 kb on + strand, within HP15_2918at 3058.327 kb on + strand, within HP15_2918at 3058.341 kb on - strand, within HP15_2918at 3058.348 kb on + strand, within HP15_2918at 3058.348 kb on + strand, within HP15_2918at 3058.356 kb on - strand, within HP15_2918at 3058.356 kb on - strand, within HP15_2918at 3058.392 kb on + strand, within HP15_2918at 3058.400 kb on - strand, within HP15_2918at 3058.402 kb on - strand, within HP15_2918at 3058.430 kb on + strand, within HP15_2918at 3058.451 kb on - strand, within HP15_2918at 3058.484 kb on - strand, within HP15_2918at 3058.512 kb on - strand, within HP15_2918at 3058.553 kb on + strandat 3058.636 kb on - strandat 3058.681 kb on + strandat 3058.689 kb on - strandat 3058.689 kb on - strandat 3058.776 kb on + strand, within HP15_2919at 3058.784 kb on - strand, within HP15_2919at 3058.913 kb on + strand, within HP15_2919at 3059.041 kb on + strand, within HP15_2919at 3059.058 kb on - strand, within HP15_2919at 3059.087 kb on + strand, within HP15_2919at 3059.092 kb on + strand, within HP15_2919at 3059.101 kb on - strand, within HP15_2919at 3059.101 kb on - strand, within HP15_2919at 3059.189 kb on + strandat 3059.250 kb on + strand, within HP15_2919at 3059.258 kb on - strand, within HP15_2919at 3059.302 kb on + strand, within HP15_2919at 3059.323 kb on - strandat 3059.333 kb on - strandat 3059.339 kb on - strandat 3059.356 kb on - strandat 3059.374 kb on + strandat 3059.378 kb on + strandat 3059.384 kb on + strandat 3059.469 kb on + strand, within HP15_2920at 3059.469 kb on + strand, within HP15_2920at 3059.477 kb on - strand, within HP15_2920at 3059.487 kb on - strand, within HP15_2920at 3059.492 kb on - strand, within HP15_2920at 3059.494 kb on - strand, within HP15_2920at 3059.547 kb on + strand, within HP15_2920at 3059.547 kb on + strand, within HP15_2920at 3059.614 kb on + strand, within HP15_2920

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,056,892 + HP15_2917 0.18 -0.5
3,057,055 + HP15_2917 0.36 +0.0
3,057,070 - HP15_2917 0.38 -0.6
3,057,080 + HP15_2917 0.39 +0.3
3,057,143 - HP15_2917 0.47 -0.6
3,057,181 - HP15_2917 0.51 +0.0
3,057,220 + HP15_2917 0.55 -1.4
3,057,221 + HP15_2917 0.56 -0.1
3,057,229 - HP15_2917 0.56 -0.3
3,057,229 - HP15_2917 0.56 -2.3
3,057,229 - HP15_2917 0.56 +0.1
3,057,229 - HP15_2917 0.56 -0.0
3,057,229 - HP15_2917 0.56 +0.1
3,057,229 - HP15_2917 0.56 +0.6
3,057,248 + HP15_2917 0.59 +1.1
3,057,343 - HP15_2917 0.70 +1.1
3,057,387 + HP15_2917 0.75 -0.8
3,057,443 + HP15_2917 0.81 -1.1
3,057,493 + HP15_2917 0.87 +1.0
3,057,521 + +0.8
3,057,539 - +0.1
3,057,539 - -0.1
3,057,654 - +0.9
3,057,782 - +0.4
3,057,886 + +0.5
3,057,892 + +1.4
3,058,069 - HP15_2918 0.28 +0.9
3,058,149 - HP15_2918 0.38 +1.1
3,058,287 + HP15_2918 0.57 -0.1
3,058,287 + HP15_2918 0.57 +0.6
3,058,327 + HP15_2918 0.62 +0.9
3,058,341 - HP15_2918 0.64 +0.9
3,058,348 + HP15_2918 0.65 +0.7
3,058,348 + HP15_2918 0.65 +0.1
3,058,356 - HP15_2918 0.66 +0.7
3,058,356 - HP15_2918 0.66 +1.1
3,058,392 + HP15_2918 0.70 +0.9
3,058,400 - HP15_2918 0.71 +0.8
3,058,402 - HP15_2918 0.72 +0.6
3,058,430 + HP15_2918 0.75 -1.3
3,058,451 - HP15_2918 0.78 -1.0
3,058,484 - HP15_2918 0.82 +0.8
3,058,512 - HP15_2918 0.86 +0.6
3,058,553 + +0.4
3,058,636 - -1.3
3,058,681 + +0.3
3,058,689 - -0.1
3,058,689 - +0.5
3,058,776 + HP15_2919 0.10 +1.8
3,058,784 - HP15_2919 0.11 +0.7
3,058,913 + HP15_2919 0.31 +0.9
3,059,041 + HP15_2919 0.50 +0.6
3,059,058 - HP15_2919 0.52 +0.3
3,059,087 + HP15_2919 0.56 +0.6
3,059,092 + HP15_2919 0.57 +0.7
3,059,101 - HP15_2919 0.58 -0.5
3,059,101 - HP15_2919 0.58 +0.3
3,059,189 + +2.9
3,059,250 + HP15_2919 0.81 +0.2
3,059,258 - HP15_2919 0.82 +0.6
3,059,302 + HP15_2919 0.88 +0.6
3,059,323 - -1.4
3,059,333 - +1.0
3,059,339 - +0.1
3,059,356 - +1.2
3,059,374 + +0.9
3,059,378 + +0.8
3,059,384 + -0.4
3,059,469 + HP15_2920 0.10 +0.8
3,059,469 + HP15_2920 0.10 -0.6
3,059,477 - HP15_2920 0.11 +0.6
3,059,487 - HP15_2920 0.13 +0.9
3,059,492 - HP15_2920 0.13 +0.4
3,059,494 - HP15_2920 0.14 +0.6
3,059,547 + HP15_2920 0.21 +0.9
3,059,547 + HP15_2920 0.21 -0.4
3,059,614 + HP15_2920 0.30 +0.3

Or see this region's nucleotide sequence