Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29870

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29850 and PGA1_c29860 are separated by 55 nucleotidesPGA1_c29860 and PGA1_c29870 are separated by 256 nucleotidesPGA1_c29870 and PGA1_c29880 overlap by 4 nucleotides PGA1_c29850: PGA1_c29850 - tRNA-Pro, at 3,122,391 to 3,122,467 _c29850 PGA1_c29860: PGA1_c29860 - hypothetical protein, at 3,122,523 to 3,123,185 _c29860 PGA1_c29870: PGA1_c29870 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 3,123,442 to 3,124,134 _c29870 PGA1_c29880: PGA1_c29880 - putative tRNA synthetase, at 3,124,131 to 3,125,219 _c29880 Position (kb) 3123 3124 3125Strain fitness (log2 ratio) -2 -1 0 1 2at 3122.545 kb on + strandat 3122.555 kb on + strandat 3122.665 kb on + strand, within PGA1_c29860at 3122.673 kb on - strand, within PGA1_c29860at 3122.791 kb on + strand, within PGA1_c29860at 3122.885 kb on - strand, within PGA1_c29860at 3122.892 kb on - strand, within PGA1_c29860at 3122.892 kb on - strand, within PGA1_c29860at 3122.892 kb on - strand, within PGA1_c29860at 3122.895 kb on + strand, within PGA1_c29860at 3122.935 kb on - strand, within PGA1_c29860at 3123.008 kb on + strand, within PGA1_c29860at 3123.018 kb on + strand, within PGA1_c29860at 3123.045 kb on - strand, within PGA1_c29860at 3123.065 kb on + strand, within PGA1_c29860at 3123.102 kb on - strand, within PGA1_c29860at 3123.127 kb on + strandat 3123.135 kb on - strandat 3123.150 kb on - strandat 3123.169 kb on + strandat 3123.221 kb on - strandat 3123.242 kb on + strandat 3123.242 kb on + strandat 3123.250 kb on - strandat 3123.250 kb on - strandat 3123.250 kb on - strandat 3123.250 kb on - strandat 3123.250 kb on - strandat 3123.252 kb on + strandat 3123.252 kb on + strandat 3123.252 kb on + strandat 3123.260 kb on - strandat 3123.260 kb on - strandat 3123.265 kb on - strandat 3123.331 kb on - strandat 3123.333 kb on - strandat 3123.377 kb on + strandat 3123.385 kb on - strandat 3123.400 kb on - strandat 3123.411 kb on - strandat 3123.440 kb on + strandat 3123.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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3,122,545 + +0.7
3,122,555 + +0.5
3,122,665 + PGA1_c29860 0.21 -1.9
3,122,673 - PGA1_c29860 0.23 -0.2
3,122,791 + PGA1_c29860 0.40 -0.4
3,122,885 - PGA1_c29860 0.55 -0.4
3,122,892 - PGA1_c29860 0.56 +0.3
3,122,892 - PGA1_c29860 0.56 -1.0
3,122,892 - PGA1_c29860 0.56 +0.4
3,122,895 + PGA1_c29860 0.56 -0.3
3,122,935 - PGA1_c29860 0.62 +0.3
3,123,008 + PGA1_c29860 0.73 +0.8
3,123,018 + PGA1_c29860 0.75 +0.3
3,123,045 - PGA1_c29860 0.79 -2.5
3,123,065 + PGA1_c29860 0.82 -1.3
3,123,102 - PGA1_c29860 0.87 +2.1
3,123,127 + +0.4
3,123,135 - +0.8
3,123,150 - -0.6
3,123,169 + -0.3
3,123,221 - +0.4
3,123,242 + -0.2
3,123,242 + -0.3
3,123,250 - +0.5
3,123,250 - -0.2
3,123,250 - -0.7
3,123,250 - -0.1
3,123,250 - -1.0
3,123,252 + +0.8
3,123,252 + -0.8
3,123,252 + +0.1
3,123,260 - +1.2
3,123,260 - +0.3
3,123,265 - +1.1
3,123,331 - +1.1
3,123,333 - +0.2
3,123,377 + -0.8
3,123,385 - -0.3
3,123,400 - -0.2
3,123,411 - +0.8
3,123,440 + -1.0
3,123,467 - -0.1

Or see this region's nucleotide sequence