Strain Fitness in Marinobacter adhaerens HP15 around HP15_2669

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2668 and HP15_2669 are separated by 58 nucleotidesHP15_2669 and HP15_2670 are separated by 26 nucleotidesHP15_2670 and HP15_2671 are separated by 26 nucleotides HP15_2668: HP15_2668 - diacylglycerol kinase, catalytic region, at 2,817,022 to 2,817,930 _2668 HP15_2669: HP15_2669 - alpha/beta hydrolase fold protein, at 2,817,989 to 2,818,900 _2669 HP15_2670: HP15_2670 - RarD protein, DMT superfamily transporter, at 2,818,927 to 2,819,817 _2670 HP15_2671: HP15_2671 - permease of the drug/metabolite transporter (DMT) superfamily-like protein, at 2,819,844 to 2,820,731 _2671 Position (kb) 2817 2818 2819Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2817.144 kb on - strand, within HP15_2668at 2817.161 kb on + strand, within HP15_2668at 2817.216 kb on - strand, within HP15_2668at 2817.308 kb on - strand, within HP15_2668at 2817.560 kb on - strand, within HP15_2668at 2817.623 kb on + strand, within HP15_2668at 2817.623 kb on + strand, within HP15_2668at 2817.635 kb on + strand, within HP15_2668at 2817.681 kb on - strand, within HP15_2668at 2817.704 kb on - strand, within HP15_2668at 2817.762 kb on - strand, within HP15_2668at 2817.776 kb on - strand, within HP15_2668at 2817.799 kb on - strand, within HP15_2668at 2817.826 kb on + strand, within HP15_2668at 2817.947 kb on + strandat 2818.048 kb on + strandat 2818.085 kb on - strand, within HP15_2669at 2818.093 kb on - strand, within HP15_2669at 2818.105 kb on - strand, within HP15_2669at 2818.111 kb on - strand, within HP15_2669at 2818.171 kb on - strand, within HP15_2669at 2818.270 kb on - strand, within HP15_2669at 2818.289 kb on - strand, within HP15_2669at 2818.501 kb on + strand, within HP15_2669at 2818.509 kb on - strand, within HP15_2669at 2818.514 kb on - strand, within HP15_2669at 2818.514 kb on - strand, within HP15_2669at 2818.563 kb on - strand, within HP15_2669at 2818.626 kb on + strand, within HP15_2669at 2818.637 kb on - strand, within HP15_2669at 2818.686 kb on + strand, within HP15_2669at 2818.764 kb on - strand, within HP15_2669at 2818.809 kb on + strandat 2818.824 kb on - strandat 2818.850 kb on + strandat 2818.867 kb on + strandat 2818.897 kb on - strandat 2818.902 kb on - strandat 2818.902 kb on - strandat 2818.904 kb on + strandat 2818.904 kb on + strandat 2818.912 kb on - strandat 2818.912 kb on - strandat 2818.978 kb on + strandat 2818.989 kb on + strandat 2819.063 kb on - strand, within HP15_2670at 2819.238 kb on + strand, within HP15_2670at 2819.276 kb on - strand, within HP15_2670at 2819.357 kb on - strand, within HP15_2670at 2819.488 kb on + strand, within HP15_2670at 2819.573 kb on + strand, within HP15_2670at 2819.578 kb on + strand, within HP15_2670at 2819.590 kb on + strand, within HP15_2670at 2819.590 kb on + strand, within HP15_2670at 2819.600 kb on + strand, within HP15_2670at 2819.668 kb on - strand, within HP15_2670at 2819.668 kb on - strand, within HP15_2670at 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.737 kb on - strandat 2819.737 kb on - strandat 2819.792 kb on - strandat 2819.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,817,144 - HP15_2668 0.13 -0.0
2,817,161 + HP15_2668 0.15 -0.8
2,817,216 - HP15_2668 0.21 -0.0
2,817,308 - HP15_2668 0.31 -0.1
2,817,560 - HP15_2668 0.59 +0.5
2,817,623 + HP15_2668 0.66 -1.7
2,817,623 + HP15_2668 0.66 -1.1
2,817,635 + HP15_2668 0.67 +0.1
2,817,681 - HP15_2668 0.72 +0.8
2,817,704 - HP15_2668 0.75 -0.2
2,817,762 - HP15_2668 0.81 -1.1
2,817,776 - HP15_2668 0.83 +0.3
2,817,799 - HP15_2668 0.85 +0.4
2,817,826 + HP15_2668 0.88 -0.8
2,817,947 + -0.1
2,818,048 + +0.6
2,818,085 - HP15_2669 0.11 -0.0
2,818,093 - HP15_2669 0.11 -0.3
2,818,105 - HP15_2669 0.13 -0.4
2,818,111 - HP15_2669 0.13 -1.9
2,818,171 - HP15_2669 0.20 +0.1
2,818,270 - HP15_2669 0.31 -2.7
2,818,289 - HP15_2669 0.33 -0.3
2,818,501 + HP15_2669 0.56 -1.9
2,818,509 - HP15_2669 0.57 -1.2
2,818,514 - HP15_2669 0.58 +0.1
2,818,514 - HP15_2669 0.58 -1.1
2,818,563 - HP15_2669 0.63 +0.3
2,818,626 + HP15_2669 0.70 +0.1
2,818,637 - HP15_2669 0.71 -0.2
2,818,686 + HP15_2669 0.76 -0.7
2,818,764 - HP15_2669 0.85 -1.0
2,818,809 + +0.6
2,818,824 - +0.2
2,818,850 + -1.3
2,818,867 + -1.3
2,818,897 - +0.7
2,818,902 - +0.2
2,818,902 - -0.1
2,818,904 + +0.4
2,818,904 + +0.3
2,818,912 - -0.9
2,818,912 - -1.5
2,818,978 + +0.1
2,818,989 + -1.3
2,819,063 - HP15_2670 0.15 -2.2
2,819,238 + HP15_2670 0.35 -0.8
2,819,276 - HP15_2670 0.39 +0.0
2,819,357 - HP15_2670 0.48 +0.3
2,819,488 + HP15_2670 0.63 -0.4
2,819,573 + HP15_2670 0.73 +0.4
2,819,578 + HP15_2670 0.73 +1.0
2,819,590 + HP15_2670 0.74 +0.1
2,819,590 + HP15_2670 0.74 +0.3
2,819,600 + HP15_2670 0.76 +0.4
2,819,668 - HP15_2670 0.83 +3.6
2,819,668 - HP15_2670 0.83 -0.4
2,819,729 + -0.7
2,819,729 + +1.5
2,819,729 + +1.0
2,819,729 + -0.5
2,819,729 + -0.9
2,819,729 + +0.3
2,819,737 - +0.3
2,819,737 - +0.3
2,819,792 - +0.0
2,819,806 - +0.8

Or see this region's nucleotide sequence