Strain Fitness in Marinobacter adhaerens HP15 around HP15_2452

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2451 and HP15_2452 overlap by 4 nucleotidesHP15_2452 and HP15_2453 are separated by 2 nucleotidesHP15_2453 and HP15_2454 overlap by 1 nucleotides HP15_2451: HP15_2451 - ribonuclease, Rne/Rng family, at 2,590,268 to 2,591,749 _2451 HP15_2452: HP15_2452 - Maf-like protein, at 2,591,746 to 2,592,351 _2452 HP15_2453: HP15_2453 - rod shape-determining protein MreD, at 2,592,354 to 2,592,830 _2453 HP15_2454: HP15_2454 - rod shape-determining protein MreC-like protein, at 2,592,830 to 2,593,660 _2454 Position (kb) 2591 2592 2593Strain fitness (log2 ratio) -2 -1 0 1at 2590.850 kb on - strand, within HP15_2451at 2590.903 kb on - strand, within HP15_2451at 2591.166 kb on - strand, within HP15_2451at 2591.404 kb on + strand, within HP15_2451at 2591.412 kb on - strand, within HP15_2451at 2592.003 kb on - strand, within HP15_2452at 2592.003 kb on - strand, within HP15_2452at 2592.008 kb on - strand, within HP15_2452at 2592.031 kb on + strand, within HP15_2452at 2592.073 kb on + strand, within HP15_2452at 2592.179 kb on - strand, within HP15_2452at 2592.205 kb on + strand, within HP15_2452at 2592.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,590,850 - HP15_2451 0.39 -2.3
2,590,903 - HP15_2451 0.43 -1.9
2,591,166 - HP15_2451 0.61 -0.4
2,591,404 + HP15_2451 0.77 -1.6
2,591,412 - HP15_2451 0.77 -1.4
2,592,003 - HP15_2452 0.42 +0.3
2,592,003 - HP15_2452 0.42 +0.4
2,592,008 - HP15_2452 0.43 +0.5
2,592,031 + HP15_2452 0.47 -0.6
2,592,073 + HP15_2452 0.54 -0.4
2,592,179 - HP15_2452 0.71 +0.1
2,592,205 + HP15_2452 0.76 -1.2
2,592,360 - -1.1

Or see this region's nucleotide sequence