Strain Fitness in Marinobacter adhaerens HP15 around HP15_204

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_202 and HP15_203 are separated by 4 nucleotidesHP15_203 and HP15_204 overlap by 4 nucleotidesHP15_204 and HP15_205 are separated by 75 nucleotidesHP15_205 and HP15_206 overlap by 14 nucleotides HP15_202: HP15_202 - oligopeptide/dipeptide ABC transporter, permease protein, at 189,596 to 190,528 _202 HP15_203: HP15_203 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 190,533 to 191,531 _203 HP15_204: HP15_204 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 191,528 to 192,538 _204 HP15_205: HP15_205 - protein containing bacterial regulatory protein, LysR domain, at 192,614 to 193,528 _205 HP15_206: HP15_206 - Xaa-Pro dipeptidase, at 193,515 to 194,837 _206 Position (kb) 191 192 193Strain fitness (log2 ratio) -1 0 1 2 3at 190.531 kb on + strandat 190.531 kb on - strandat 190.539 kb on - strandat 190.582 kb on + strandat 190.622 kb on + strandat 190.622 kb on + strandat 190.630 kb on - strandat 190.653 kb on - strand, within HP15_203at 190.746 kb on + strand, within HP15_203at 190.771 kb on + strand, within HP15_203at 190.792 kb on + strand, within HP15_203at 190.845 kb on + strand, within HP15_203at 190.853 kb on - strand, within HP15_203at 190.886 kb on - strand, within HP15_203at 190.923 kb on + strand, within HP15_203at 190.923 kb on + strand, within HP15_203at 190.923 kb on + strand, within HP15_203at 190.923 kb on + strand, within HP15_203at 190.931 kb on - strand, within HP15_203at 190.931 kb on - strand, within HP15_203at 190.967 kb on - strand, within HP15_203at 190.992 kb on - strand, within HP15_203at 190.994 kb on + strand, within HP15_203at 190.994 kb on + strand, within HP15_203at 191.164 kb on + strand, within HP15_203at 191.273 kb on + strand, within HP15_203at 191.273 kb on + strand, within HP15_203at 191.273 kb on + strand, within HP15_203at 191.275 kb on + strand, within HP15_203at 191.281 kb on - strand, within HP15_203at 191.281 kb on - strand, within HP15_203at 191.299 kb on - strand, within HP15_203at 191.308 kb on + strand, within HP15_203at 191.311 kb on - strand, within HP15_203at 191.418 kb on - strand, within HP15_203at 191.532 kb on + strandat 191.543 kb on - strandat 191.604 kb on + strandat 191.604 kb on + strandat 191.689 kb on - strand, within HP15_204at 191.690 kb on - strand, within HP15_204at 191.695 kb on - strand, within HP15_204at 191.804 kb on - strand, within HP15_204at 191.809 kb on + strand, within HP15_204at 191.851 kb on - strand, within HP15_204at 191.879 kb on - strand, within HP15_204at 191.897 kb on - strand, within HP15_204at 191.901 kb on + strand, within HP15_204at 191.909 kb on - strand, within HP15_204at 191.953 kb on - strand, within HP15_204at 191.993 kb on + strand, within HP15_204at 191.993 kb on + strand, within HP15_204at 191.998 kb on + strand, within HP15_204at 192.001 kb on - strand, within HP15_204at 192.006 kb on - strand, within HP15_204at 192.006 kb on - strand, within HP15_204at 192.006 kb on - strand, within HP15_204at 192.067 kb on - strand, within HP15_204at 192.140 kb on - strand, within HP15_204at 192.250 kb on - strand, within HP15_204at 192.325 kb on + strand, within HP15_204at 192.362 kb on + strand, within HP15_204at 192.370 kb on - strand, within HP15_204at 192.563 kb on - strandat 192.599 kb on + strandat 192.649 kb on + strandat 192.649 kb on + strandat 192.649 kb on + strandat 192.657 kb on - strandat 192.657 kb on - strandat 192.745 kb on - strand, within HP15_205at 193.027 kb on - strand, within HP15_205at 193.080 kb on - strand, within HP15_205at 193.100 kb on + strand, within HP15_205at 193.144 kb on - strand, within HP15_205at 193.191 kb on + strand, within HP15_205at 193.213 kb on - strand, within HP15_205at 193.305 kb on + strand, within HP15_205at 193.340 kb on + strand, within HP15_205at 193.340 kb on + strand, within HP15_205at 193.348 kb on - strand, within HP15_205at 193.380 kb on - strand, within HP15_205at 193.416 kb on - strand, within HP15_205at 193.459 kb on - strandat 193.496 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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190,531 + +0.1
190,531 - +0.9
190,539 - +1.5
190,582 + -0.5
190,622 + +0.3
190,622 + -0.0
190,630 - +0.8
190,653 - HP15_203 0.12 -0.2
190,746 + HP15_203 0.21 +0.6
190,771 + HP15_203 0.24 +2.3
190,792 + HP15_203 0.26 +1.9
190,845 + HP15_203 0.31 -0.0
190,853 - HP15_203 0.32 -0.4
190,886 - HP15_203 0.35 +0.5
190,923 + HP15_203 0.39 -1.3
190,923 + HP15_203 0.39 +0.4
190,923 + HP15_203 0.39 +0.7
190,923 + HP15_203 0.39 -0.6
190,931 - HP15_203 0.40 +0.3
190,931 - HP15_203 0.40 -0.6
190,967 - HP15_203 0.43 +0.3
190,992 - HP15_203 0.46 -0.9
190,994 + HP15_203 0.46 +0.2
190,994 + HP15_203 0.46 +0.9
191,164 + HP15_203 0.63 +0.8
191,273 + HP15_203 0.74 +0.3
191,273 + HP15_203 0.74 +0.8
191,273 + HP15_203 0.74 -0.1
191,275 + HP15_203 0.74 +3.2
191,281 - HP15_203 0.75 +0.4
191,281 - HP15_203 0.75 -0.4
191,299 - HP15_203 0.77 -1.0
191,308 + HP15_203 0.78 -1.4
191,311 - HP15_203 0.78 -0.1
191,418 - HP15_203 0.89 +2.3
191,532 + +1.6
191,543 - +0.6
191,604 + +1.0
191,604 + +0.8
191,689 - HP15_204 0.16 -0.1
191,690 - HP15_204 0.16 +0.7
191,695 - HP15_204 0.17 +1.1
191,804 - HP15_204 0.27 +2.0
191,809 + HP15_204 0.28 +0.9
191,851 - HP15_204 0.32 -0.0
191,879 - HP15_204 0.35 +1.1
191,897 - HP15_204 0.36 +0.7
191,901 + HP15_204 0.37 -0.5
191,909 - HP15_204 0.38 -0.7
191,953 - HP15_204 0.42 +1.2
191,993 + HP15_204 0.46 -0.7
191,993 + HP15_204 0.46 +1.1
191,998 + HP15_204 0.46 -0.1
192,001 - HP15_204 0.47 +0.5
192,006 - HP15_204 0.47 -0.8
192,006 - HP15_204 0.47 +0.7
192,006 - HP15_204 0.47 +0.0
192,067 - HP15_204 0.53 +1.2
192,140 - HP15_204 0.61 +3.7
192,250 - HP15_204 0.71 +0.1
192,325 + HP15_204 0.79 +0.4
192,362 + HP15_204 0.82 +0.8
192,370 - HP15_204 0.83 +0.7
192,563 - -0.2
192,599 + +0.0
192,649 + +0.9
192,649 + +0.7
192,649 + +0.7
192,657 - +1.0
192,657 - +1.0
192,745 - HP15_205 0.14 -0.0
193,027 - HP15_205 0.45 +0.9
193,080 - HP15_205 0.51 +1.2
193,100 + HP15_205 0.53 +0.5
193,144 - HP15_205 0.58 -0.0
193,191 + HP15_205 0.63 +0.8
193,213 - HP15_205 0.65 +1.5
193,305 + HP15_205 0.76 +1.2
193,340 + HP15_205 0.79 +0.8
193,340 + HP15_205 0.79 +1.0
193,348 - HP15_205 0.80 +1.0
193,380 - HP15_205 0.84 +1.1
193,416 - HP15_205 0.88 +2.0
193,459 - +0.9
193,496 - +1.9

Or see this region's nucleotide sequence