Strain Fitness in Marinobacter adhaerens HP15 around HP15_1859

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1858 and HP15_1859 are separated by 1 nucleotidesHP15_1859 and HP15_1860 are separated by 29 nucleotidesHP15_1860 and HP15_1861 are separated by 143 nucleotides HP15_1858: HP15_1858 - peptidoglycan-binding domain 1 protein, at 1,960,145 to 1,961,851 _1858 HP15_1859: HP15_1859 - patatin-like phospholipase domain-containing protein, at 1,961,853 to 1,963,340 _1859 HP15_1860: HP15_1860 - VacJ family lipoprotein, at 1,963,370 to 1,964,161 _1860 HP15_1861: HP15_1861 - thioesterase superfamily protein, at 1,964,305 to 1,964,655 _1861 Position (kb) 1961 1962 1963 1964Strain fitness (log2 ratio) -1 0 1 2 3 4at 1960.903 kb on + strand, within HP15_1858at 1960.996 kb on + strand, within HP15_1858at 1961.088 kb on + strand, within HP15_1858at 1961.110 kb on + strand, within HP15_1858at 1961.245 kb on + strand, within HP15_1858at 1961.353 kb on + strand, within HP15_1858at 1961.450 kb on + strand, within HP15_1858at 1961.729 kb on + strandat 1961.737 kb on - strandat 1961.889 kb on + strandat 1961.893 kb on - strandat 1961.893 kb on - strandat 1961.936 kb on + strandat 1961.944 kb on - strandat 1962.026 kb on + strand, within HP15_1859at 1962.326 kb on - strand, within HP15_1859at 1962.327 kb on - strand, within HP15_1859at 1962.329 kb on - strand, within HP15_1859at 1962.423 kb on - strand, within HP15_1859at 1962.480 kb on + strand, within HP15_1859at 1962.495 kb on + strand, within HP15_1859at 1962.549 kb on + strand, within HP15_1859at 1962.778 kb on - strand, within HP15_1859at 1962.811 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.003 kb on + strand, within HP15_1859at 1963.011 kb on - strand, within HP15_1859at 1963.011 kb on - strand, within HP15_1859at 1963.016 kb on - strand, within HP15_1859at 1963.059 kb on + strand, within HP15_1859at 1963.059 kb on + strand, within HP15_1859at 1963.067 kb on - strand, within HP15_1859at 1963.105 kb on - strand, within HP15_1859at 1963.106 kb on - strand, within HP15_1859at 1963.113 kb on - strand, within HP15_1859at 1963.115 kb on - strand, within HP15_1859at 1963.267 kb on + strandat 1963.348 kb on - strandat 1963.637 kb on + strand, within HP15_1860at 1963.637 kb on + strand, within HP15_1860at 1963.749 kb on - strand, within HP15_1860at 1963.777 kb on + strand, within HP15_1860at 1963.777 kb on + strand, within HP15_1860at 1963.784 kb on + strand, within HP15_1860at 1963.867 kb on + strand, within HP15_1860at 1964.035 kb on - strand, within HP15_1860at 1964.249 kb on + strandat 1964.274 kb on + strandat 1964.284 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
1,960,903 + HP15_1858 0.44 -1.2
1,960,996 + HP15_1858 0.50 -0.1
1,961,088 + HP15_1858 0.55 -0.6
1,961,110 + HP15_1858 0.57 -1.4
1,961,245 + HP15_1858 0.64 -0.0
1,961,353 + HP15_1858 0.71 +0.1
1,961,450 + HP15_1858 0.76 +0.1
1,961,729 + +1.2
1,961,737 - +0.6
1,961,889 + +0.4
1,961,893 - +0.5
1,961,893 - -1.2
1,961,936 + -0.3
1,961,944 - +0.2
1,962,026 + HP15_1859 0.12 +0.5
1,962,326 - HP15_1859 0.32 -0.5
1,962,327 - HP15_1859 0.32 +0.5
1,962,329 - HP15_1859 0.32 -0.4
1,962,423 - HP15_1859 0.38 +0.8
1,962,480 + HP15_1859 0.42 +0.3
1,962,495 + HP15_1859 0.43 -1.6
1,962,549 + HP15_1859 0.47 +0.6
1,962,778 - HP15_1859 0.62 +0.4
1,962,811 + HP15_1859 0.64 +0.3
1,963,003 + HP15_1859 0.77 +0.3
1,963,003 + HP15_1859 0.77 +0.4
1,963,003 + HP15_1859 0.77 +0.5
1,963,003 + HP15_1859 0.77 +0.6
1,963,003 + HP15_1859 0.77 +0.2
1,963,003 + HP15_1859 0.77 -0.8
1,963,003 + HP15_1859 0.77 +1.3
1,963,003 + HP15_1859 0.77 +0.6
1,963,011 - HP15_1859 0.78 +0.2
1,963,011 - HP15_1859 0.78 -1.0
1,963,016 - HP15_1859 0.78 +0.5
1,963,059 + HP15_1859 0.81 -0.1
1,963,059 + HP15_1859 0.81 +0.9
1,963,067 - HP15_1859 0.82 +1.3
1,963,105 - HP15_1859 0.84 +0.2
1,963,106 - HP15_1859 0.84 -0.4
1,963,113 - HP15_1859 0.85 +0.1
1,963,115 - HP15_1859 0.85 +1.2
1,963,267 + +0.1
1,963,348 - +0.8
1,963,637 + HP15_1860 0.34 +2.6
1,963,637 + HP15_1860 0.34 +3.5
1,963,749 - HP15_1860 0.48 +3.8
1,963,777 + HP15_1860 0.51 +3.5
1,963,777 + HP15_1860 0.51 +3.2
1,963,784 + HP15_1860 0.52 +2.9
1,963,867 + HP15_1860 0.63 +3.0
1,964,035 - HP15_1860 0.84 +3.6
1,964,249 + +3.4
1,964,274 + +2.6
1,964,284 - -0.3

Or see this region's nucleotide sequence