Strain Fitness in Marinobacter adhaerens HP15 around HP15_1806

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1805 and HP15_1806 are separated by 168 nucleotidesHP15_1806 and HP15_1807 are separated by 12 nucleotides HP15_1805: HP15_1805 - hydroxyacylglutathione hydrolase, at 1,897,102 to 1,897,896 _1805 HP15_1806: HP15_1806 - membrane-bound lytic murein transglycosylase D precursor, at 1,898,065 to 1,899,765 _1806 HP15_1807: HP15_1807 - peptide ABC transporter, periplasmic peptide-binding protein, at 1,899,778 to 1,901,601 _1807 Position (kb) 1898 1899 1900Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.105 kb on - strandat 1897.105 kb on - strandat 1897.105 kb on - strandat 1897.210 kb on + strand, within HP15_1805at 1897.218 kb on - strand, within HP15_1805at 1897.278 kb on - strand, within HP15_1805at 1897.335 kb on - strand, within HP15_1805at 1897.412 kb on + strand, within HP15_1805at 1897.481 kb on - strand, within HP15_1805at 1897.534 kb on + strand, within HP15_1805at 1897.570 kb on + strand, within HP15_1805at 1897.570 kb on + strand, within HP15_1805at 1897.578 kb on - strand, within HP15_1805at 1897.615 kb on + strand, within HP15_1805at 1897.925 kb on + strandat 1899.258 kb on + strand, within HP15_1806at 1899.335 kb on + strand, within HP15_1806at 1899.404 kb on + strand, within HP15_1806at 1899.422 kb on - strand, within HP15_1806at 1899.560 kb on - strand, within HP15_1806at 1899.699 kb on - strandat 1899.804 kb on - strandat 1899.821 kb on - strandat 1899.832 kb on - strandat 1900.076 kb on - strand, within HP15_1807at 1900.304 kb on + strand, within HP15_1807at 1900.409 kb on - strand, within HP15_1807at 1900.476 kb on + strand, within HP15_1807at 1900.484 kb on - strand, within HP15_1807at 1900.562 kb on - strand, within HP15_1807at 1900.577 kb on - strand, within HP15_1807at 1900.614 kb on + strand, within HP15_1807

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,897,097 + -0.5
1,897,097 + -0.6
1,897,097 + -0.0
1,897,097 + -2.1
1,897,097 + -0.6
1,897,105 - -1.0
1,897,105 - -2.0
1,897,105 - -1.3
1,897,210 + HP15_1805 0.14 -1.1
1,897,218 - HP15_1805 0.15 -1.6
1,897,278 - HP15_1805 0.22 -1.5
1,897,335 - HP15_1805 0.29 -1.4
1,897,412 + HP15_1805 0.39 -2.5
1,897,481 - HP15_1805 0.48 -1.0
1,897,534 + HP15_1805 0.54 -0.4
1,897,570 + HP15_1805 0.59 -1.0
1,897,570 + HP15_1805 0.59 -1.7
1,897,578 - HP15_1805 0.60 -3.0
1,897,615 + HP15_1805 0.65 -1.2
1,897,925 + -0.7
1,899,258 + HP15_1806 0.70 -4.6
1,899,335 + HP15_1806 0.75 -3.0
1,899,404 + HP15_1806 0.79 -2.6
1,899,422 - HP15_1806 0.80 -1.6
1,899,560 - HP15_1806 0.88 -1.6
1,899,699 - -2.5
1,899,804 - +0.5
1,899,821 - +2.7
1,899,832 - -1.2
1,900,076 - HP15_1807 0.16 +1.3
1,900,304 + HP15_1807 0.29 -2.0
1,900,409 - HP15_1807 0.35 -0.2
1,900,476 + HP15_1807 0.38 -0.3
1,900,484 - HP15_1807 0.39 +0.5
1,900,562 - HP15_1807 0.43 +1.1
1,900,577 - HP15_1807 0.44 +0.4
1,900,614 + HP15_1807 0.46 +0.7

Or see this region's nucleotide sequence