Strain Fitness in Marinobacter adhaerens HP15 around HP15_1805

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1803 and HP15_1804 are separated by 28 nucleotidesHP15_1804 and HP15_1805 are separated by 96 nucleotidesHP15_1805 and HP15_1806 are separated by 168 nucleotides HP15_1803: HP15_1803 - ribonuclease Hi chain A-like protein, at 1,895,739 to 1,896,182 _1803 HP15_1804: HP15_1804 - generic methyl-transferase, at 1,896,211 to 1,897,005 _1804 HP15_1805: HP15_1805 - hydroxyacylglutathione hydrolase, at 1,897,102 to 1,897,896 _1805 HP15_1806: HP15_1806 - membrane-bound lytic murein transglycosylase D precursor, at 1,898,065 to 1,899,765 _1806 Position (kb) 1897 1898Strain fitness (log2 ratio) -3 -2 -1 0 1at 1896.275 kb on + strandat 1896.480 kb on + strand, within HP15_1804at 1896.547 kb on - strand, within HP15_1804at 1896.581 kb on + strand, within HP15_1804at 1896.589 kb on + strand, within HP15_1804at 1896.612 kb on + strand, within HP15_1804at 1896.666 kb on - strand, within HP15_1804at 1896.674 kb on + strand, within HP15_1804at 1896.738 kb on - strand, within HP15_1804at 1896.794 kb on + strand, within HP15_1804at 1896.794 kb on + strand, within HP15_1804at 1896.939 kb on - strandat 1896.939 kb on - strandat 1896.939 kb on - strandat 1896.949 kb on - strandat 1896.961 kb on + strandat 1896.961 kb on + strandat 1897.018 kb on + strandat 1897.045 kb on - strandat 1897.046 kb on - strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.097 kb on + strandat 1897.105 kb on - strandat 1897.105 kb on - strandat 1897.105 kb on - strandat 1897.210 kb on + strand, within HP15_1805at 1897.218 kb on - strand, within HP15_1805at 1897.278 kb on - strand, within HP15_1805at 1897.335 kb on - strand, within HP15_1805at 1897.412 kb on + strand, within HP15_1805at 1897.481 kb on - strand, within HP15_1805at 1897.534 kb on + strand, within HP15_1805at 1897.570 kb on + strand, within HP15_1805at 1897.570 kb on + strand, within HP15_1805at 1897.578 kb on - strand, within HP15_1805at 1897.615 kb on + strand, within HP15_1805at 1897.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,896,275 + +0.9
1,896,480 + HP15_1804 0.34 +0.2
1,896,547 - HP15_1804 0.42 +1.1
1,896,581 + HP15_1804 0.47 -0.1
1,896,589 + HP15_1804 0.48 +0.7
1,896,612 + HP15_1804 0.50 -0.7
1,896,666 - HP15_1804 0.57 +0.4
1,896,674 + HP15_1804 0.58 +0.4
1,896,738 - HP15_1804 0.66 +0.5
1,896,794 + HP15_1804 0.73 +0.3
1,896,794 + HP15_1804 0.73 -0.5
1,896,939 - +0.5
1,896,939 - -0.7
1,896,939 - +0.9
1,896,949 - +1.5
1,896,961 + +0.9
1,896,961 + +0.6
1,897,018 + -0.2
1,897,045 - +0.6
1,897,046 - +0.9
1,897,097 + -0.5
1,897,097 + -0.6
1,897,097 + -0.0
1,897,097 + -2.1
1,897,097 + -0.6
1,897,105 - -1.0
1,897,105 - -2.0
1,897,105 - -1.3
1,897,210 + HP15_1805 0.14 -1.1
1,897,218 - HP15_1805 0.15 -1.6
1,897,278 - HP15_1805 0.22 -1.5
1,897,335 - HP15_1805 0.29 -1.4
1,897,412 + HP15_1805 0.39 -2.5
1,897,481 - HP15_1805 0.48 -1.0
1,897,534 + HP15_1805 0.54 -0.4
1,897,570 + HP15_1805 0.59 -1.0
1,897,570 + HP15_1805 0.59 -1.7
1,897,578 - HP15_1805 0.60 -3.0
1,897,615 + HP15_1805 0.65 -1.2
1,897,925 + -0.7

Or see this region's nucleotide sequence