Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0389

Experiment: MoLS4 with L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0387 and DVU0388 are separated by 8 nucleotidesDVU0388 and DVU0389 overlap by 1 nucleotidesDVU0389 and glcD are separated by 25 nucleotides DVU0387: DVU0387 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 435,519 to 436,196 DVU0387 DVU0388: DVU0388 - amino acid ABC transporter, ATP-binding protein (TIGR), at 436,205 to 436,972 DVU0388 DVU0389: DVU0389 - amino acid ABC tranporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 436,972 to 437,646 DVU0389 DVU0390: glcD - glycolate oxidase, subunit GlcD, putative (TIGR), at 437,672 to 439,054 glcD Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1at 435.979 kb on + strand, within DVU0387at 435.987 kb on - strand, within DVU0387at 435.989 kb on + strand, within DVU0387at 436.074 kb on - strand, within DVU0387at 436.112 kb on - strand, within DVU0387at 436.137 kb on - strandat 436.215 kb on + strandat 436.228 kb on - strandat 436.229 kb on - strandat 436.266 kb on + strandat 436.324 kb on - strand, within DVU0388at 436.360 kb on - strand, within DVU0388at 436.360 kb on - strand, within DVU0388at 436.362 kb on + strand, within DVU0388at 436.429 kb on + strand, within DVU0388at 436.429 kb on + strand, within DVU0388at 436.534 kb on + strand, within DVU0388at 436.622 kb on - strand, within DVU0388at 436.627 kb on - strand, within DVU0388at 436.644 kb on - strand, within DVU0388at 436.644 kb on - strand, within DVU0388at 436.681 kb on + strand, within DVU0388at 436.690 kb on + strand, within DVU0388at 436.724 kb on + strand, within DVU0388at 436.731 kb on + strand, within DVU0388at 436.852 kb on - strand, within DVU0388at 436.879 kb on + strand, within DVU0388at 436.976 kb on - strandat 437.016 kb on + strandat 437.018 kb on + strandat 437.071 kb on - strand, within DVU0389at 437.116 kb on + strand, within DVU0389at 437.124 kb on - strand, within DVU0389at 437.154 kb on + strand, within DVU0389at 437.162 kb on - strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.181 kb on + strand, within DVU0389at 437.205 kb on + strand, within DVU0389at 437.245 kb on + strand, within DVU0389at 437.260 kb on - strand, within DVU0389at 437.270 kb on - strand, within DVU0389at 437.270 kb on - strand, within DVU0389at 437.270 kb on - strand, within DVU0389at 437.299 kb on + strand, within DVU0389at 437.317 kb on - strand, within DVU0389at 437.320 kb on + strand, within DVU0389at 437.325 kb on + strand, within DVU0389at 437.325 kb on + strand, within DVU0389at 437.333 kb on - strand, within DVU0389at 437.358 kb on + strand, within DVU0389at 437.358 kb on + strand, within DVU0389at 437.358 kb on + strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.366 kb on - strand, within DVU0389at 437.499 kb on + strand, within DVU0389at 437.564 kb on - strand, within DVU0389at 437.597 kb on + strandat 437.649 kb on - strandat 437.660 kb on + strandat 437.668 kb on + strandat 437.676 kb on - strandat 437.676 kb on - strandat 437.789 kb on - strandat 437.916 kb on - strand, within glcDat 437.919 kb on + strand, within glcDat 437.937 kb on + strand, within glcDat 438.022 kb on + strand, within glcDat 438.083 kb on + strand, within glcDat 438.083 kb on + strand, within glcDat 438.091 kb on - strand, within glcDat 438.244 kb on + strand, within glcDat 438.253 kb on - strand, within glcDat 438.270 kb on - strand, within glcDat 438.288 kb on - strand, within glcDat 438.295 kb on - strand, within glcDat 438.317 kb on - strand, within glcDat 438.336 kb on - strand, within glcDat 438.343 kb on + strand, within glcDat 438.350 kb on + strand, within glcDat 438.350 kb on + strand, within glcDat 438.351 kb on - strand, within glcDat 438.357 kb on - strand, within glcDat 438.358 kb on - strand, within glcDat 438.395 kb on + strand, within glcDat 438.440 kb on + strand, within glcDat 438.450 kb on + strand, within glcDat 438.598 kb on + strand, within glcDat 438.598 kb on + strand, within glcDat 438.634 kb on + strand, within glcDat 438.642 kb on - strand, within glcD

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Valine (N)
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435,979 + DVU0387 0.68 -1.0
435,987 - DVU0387 0.69 -0.4
435,989 + DVU0387 0.69 -1.4
436,074 - DVU0387 0.82 -1.5
436,112 - DVU0387 0.87 -0.1
436,137 - +0.9
436,215 + -1.2
436,228 - -1.3
436,229 - +0.6
436,266 + -1.0
436,324 - DVU0388 0.15 -0.5
436,360 - DVU0388 0.20 -0.1
436,360 - DVU0388 0.20 -1.3
436,362 + DVU0388 0.20 +0.1
436,429 + DVU0388 0.29 -0.4
436,429 + DVU0388 0.29 -0.8
436,534 + DVU0388 0.43 +0.7
436,622 - DVU0388 0.54 -0.7
436,627 - DVU0388 0.55 -0.5
436,644 - DVU0388 0.57 -0.4
436,644 - DVU0388 0.57 -0.8
436,681 + DVU0388 0.62 -0.2
436,690 + DVU0388 0.63 +0.7
436,724 + DVU0388 0.68 -0.7
436,731 + DVU0388 0.68 -1.5
436,852 - DVU0388 0.84 -0.9
436,879 + DVU0388 0.88 +0.2
436,976 - -0.1
437,016 + +0.1
437,018 + -1.6
437,071 - DVU0389 0.15 -0.3
437,116 + DVU0389 0.21 +0.4
437,124 - DVU0389 0.23 -1.9
437,154 + DVU0389 0.27 -1.9
437,162 - DVU0389 0.28 -1.4
437,181 + DVU0389 0.31 +0.3
437,181 + DVU0389 0.31 -0.1
437,181 + DVU0389 0.31 -0.3
437,205 + DVU0389 0.35 -0.3
437,245 + DVU0389 0.40 -1.2
437,260 - DVU0389 0.43 -0.5
437,270 - DVU0389 0.44 -1.8
437,270 - DVU0389 0.44 -0.5
437,270 - DVU0389 0.44 -1.0
437,299 + DVU0389 0.48 -1.2
437,317 - DVU0389 0.51 -0.9
437,320 + DVU0389 0.52 -0.4
437,325 + DVU0389 0.52 -1.2
437,325 + DVU0389 0.52 -0.8
437,333 - DVU0389 0.53 -0.7
437,358 + DVU0389 0.57 -0.6
437,358 + DVU0389 0.57 -2.7
437,358 + DVU0389 0.57 +1.2
437,366 - DVU0389 0.58 -0.9
437,366 - DVU0389 0.58 -0.1
437,366 - DVU0389 0.58 -1.9
437,366 - DVU0389 0.58 -0.2
437,499 + DVU0389 0.78 -0.6
437,564 - DVU0389 0.88 -0.5
437,597 + +0.0
437,649 - -0.0
437,660 + -0.0
437,668 + -0.2
437,676 - +0.7
437,676 - -0.2
437,789 - +0.6
437,916 - glcD DVU0390 0.18 +0.1
437,919 + glcD DVU0390 0.18 -0.3
437,937 + glcD DVU0390 0.19 +0.0
438,022 + glcD DVU0390 0.25 +0.2
438,083 + glcD DVU0390 0.30 -0.2
438,083 + glcD DVU0390 0.30 +1.0
438,091 - glcD DVU0390 0.30 -1.0
438,244 + glcD DVU0390 0.41 -0.0
438,253 - glcD DVU0390 0.42 +0.5
438,270 - glcD DVU0390 0.43 -0.3
438,288 - glcD DVU0390 0.45 -0.1
438,295 - glcD DVU0390 0.45 +0.1
438,317 - glcD DVU0390 0.47 +0.2
438,336 - glcD DVU0390 0.48 -0.7
438,343 + glcD DVU0390 0.49 +0.3
438,350 + glcD DVU0390 0.49 +0.0
438,350 + glcD DVU0390 0.49 -0.0
438,351 - glcD DVU0390 0.49 +0.1
438,357 - glcD DVU0390 0.50 +0.6
438,358 - glcD DVU0390 0.50 +1.0
438,395 + glcD DVU0390 0.52 -0.0
438,440 + glcD DVU0390 0.56 +0.2
438,450 + glcD DVU0390 0.56 -0.0
438,598 + glcD DVU0390 0.67 -0.7
438,598 + glcD DVU0390 0.67 +0.2
438,634 + glcD DVU0390 0.70 -0.2
438,642 - glcD DVU0390 0.70 -0.8

Or see this region's nucleotide sequence