Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.993.1 and Xcc-8004.994.1 are separated by 62 nucleotides Xcc-8004.994.1 and Xcc-8004.995.1 are separated by 78 nucleotides Xcc-8004.995.1 and Xcc-8004.996.1 are separated by 0 nucleotides
Xcc-8004.993.1: Xcc-8004.993.1 - cellulase S, at 941,628 to 942,416
Xcc-8004.993.1
Xcc-8004.994.1: Xcc-8004.994.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 942,479 to 942,898
Xcc-8004.994.1
Xcc-8004.995.1: Xcc-8004.995.1 - rhamnogalacturonase B, at 942,977 to 943,399
Xcc-8004.995.1
Xcc-8004.996.1: Xcc-8004.996.1 - Rhamnogalacturonate lyase precursor (EC 4.2.2.-), at 943,400 to 944,101
Xcc-8004.996.1
Position (kb) 942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 941.596 kb on - strand at 941.596 kb on - strand at 941.725 kb on - strand, within Xcc-8004.993.1 at 941.743 kb on + strand, within Xcc-8004.993.1 at 941.743 kb on + strand, within Xcc-8004.993.1 at 941.743 kb on + strand, within Xcc-8004.993.1 at 941.744 kb on - strand, within Xcc-8004.993.1 at 941.758 kb on - strand, within Xcc-8004.993.1 at 941.758 kb on - strand, within Xcc-8004.993.1 at 941.763 kb on + strand, within Xcc-8004.993.1 at 941.790 kb on - strand, within Xcc-8004.993.1 at 941.844 kb on + strand, within Xcc-8004.993.1 at 941.844 kb on + strand, within Xcc-8004.993.1 at 941.845 kb on - strand, within Xcc-8004.993.1 at 941.845 kb on - strand, within Xcc-8004.993.1 at 941.901 kb on + strand, within Xcc-8004.993.1 at 942.108 kb on - strand, within Xcc-8004.993.1 at 942.108 kb on - strand, within Xcc-8004.993.1 at 942.150 kb on + strand, within Xcc-8004.993.1 at 942.150 kb on + strand, within Xcc-8004.993.1 at 942.189 kb on + strand, within Xcc-8004.993.1 at 942.190 kb on - strand, within Xcc-8004.993.1 at 942.230 kb on + strand, within Xcc-8004.993.1 at 942.333 kb on + strand, within Xcc-8004.993.1 at 942.333 kb on + strand, within Xcc-8004.993.1 at 942.334 kb on - strand, within Xcc-8004.993.1 at 942.334 kb on - strand, within Xcc-8004.993.1 at 942.420 kb on + strand at 942.420 kb on + strand at 942.421 kb on - strand at 942.507 kb on + strand at 942.797 kb on - strand, within Xcc-8004.994.1 at 942.876 kb on + strand at 942.877 kb on - strand at 942.877 kb on - strand at 942.877 kb on - strand at 942.939 kb on + strand at 943.083 kb on + strand, within Xcc-8004.995.1 at 943.083 kb on + strand, within Xcc-8004.995.1 at 943.084 kb on - strand, within Xcc-8004.995.1 at 943.129 kb on - strand, within Xcc-8004.995.1 at 943.158 kb on + strand, within Xcc-8004.995.1 at 943.401 kb on + strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.402 kb on - strand at 943.402 kb on - strand at 943.408 kb on - strand at 943.561 kb on - strand, within Xcc-8004.996.1 at 943.734 kb on + strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.735 kb on - strand, within Xcc-8004.996.1 at 943.764 kb on + strand, within Xcc-8004.996.1 at 943.764 kb on + strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.765 kb on - strand, within Xcc-8004.996.1 at 943.767 kb on + strand, within Xcc-8004.996.1 at 943.768 kb on - strand, within Xcc-8004.996.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 941,596 - -1.8 941,596 - +1.9 941,725 - Xcc-8004.993.1 0.12 -0.2 941,743 + Xcc-8004.993.1 0.15 +0.7 941,743 + Xcc-8004.993.1 0.15 -1.3 941,743 + Xcc-8004.993.1 0.15 +0.1 941,744 - Xcc-8004.993.1 0.15 +0.9 941,758 - Xcc-8004.993.1 0.16 -1.3 941,758 - Xcc-8004.993.1 0.16 -1.4 941,763 + Xcc-8004.993.1 0.17 -1.2 941,790 - Xcc-8004.993.1 0.21 +0.2 941,844 + Xcc-8004.993.1 0.27 -1.0 941,844 + Xcc-8004.993.1 0.27 +0.3 941,845 - Xcc-8004.993.1 0.28 -0.0 941,845 - Xcc-8004.993.1 0.28 -3.5 941,901 + Xcc-8004.993.1 0.35 +1.4 942,108 - Xcc-8004.993.1 0.61 -0.6 942,108 - Xcc-8004.993.1 0.61 -2.1 942,150 + Xcc-8004.993.1 0.66 -1.2 942,150 + Xcc-8004.993.1 0.66 -0.9 942,189 + Xcc-8004.993.1 0.71 -2.4 942,190 - Xcc-8004.993.1 0.71 +0.6 942,230 + Xcc-8004.993.1 0.76 +0.1 942,333 + Xcc-8004.993.1 0.89 +0.6 942,333 + Xcc-8004.993.1 0.89 -0.0 942,334 - Xcc-8004.993.1 0.89 -2.2 942,334 - Xcc-8004.993.1 0.89 -1.0 942,420 + +2.6 942,420 + -1.5 942,421 - -2.2 942,507 + -0.6 942,797 - Xcc-8004.994.1 0.76 +0.9 942,876 + -1.1 942,877 - -1.4 942,877 - -0.1 942,877 - -0.5 942,939 + +0.7 943,083 + Xcc-8004.995.1 0.25 +1.3 943,083 + Xcc-8004.995.1 0.25 +0.4 943,084 - Xcc-8004.995.1 0.25 +0.9 943,129 - Xcc-8004.995.1 0.36 +3.5 943,158 + Xcc-8004.995.1 0.43 -0.3 943,401 + -1.7 943,401 + -1.0 943,401 + +0.6 943,401 + -0.1 943,401 + -1.9 943,401 + -0.2 943,402 - +1.2 943,402 - -1.5 943,408 - +1.2 943,561 - Xcc-8004.996.1 0.23 +1.7 943,734 + Xcc-8004.996.1 0.48 -3.1 943,735 - Xcc-8004.996.1 0.48 -1.8 943,735 - Xcc-8004.996.1 0.48 +0.3 943,735 - Xcc-8004.996.1 0.48 +0.6 943,735 - Xcc-8004.996.1 0.48 +1.1 943,764 + Xcc-8004.996.1 0.52 -0.0 943,764 + Xcc-8004.996.1 0.52 -1.2 943,765 - Xcc-8004.996.1 0.52 -0.2 943,765 - Xcc-8004.996.1 0.52 -0.4 943,765 - Xcc-8004.996.1 0.52 +2.0 943,765 - Xcc-8004.996.1 0.52 +0.7 943,767 + Xcc-8004.996.1 0.52 -0.3 943,768 - Xcc-8004.996.1 0.52 -0.8
Or see this region's nucleotide sequence