Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4528.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4527.1 and Xcc-8004.4528.1 are separated by 115 nucleotidesXcc-8004.4528.1 and Xcc-8004.4529.1 are separated by 189 nucleotidesXcc-8004.4529.1 and Xcc-8004.4530.1 are separated by 153 nucleotides Xcc-8004.4527.1: Xcc-8004.4527.1 - ATP-dependent RNA helicase RhlE, at 4,325,806 to 4,327,194 Xcc-8004.4527.1 Xcc-8004.4528.1: Xcc-8004.4528.1 - hypothetical protein, at 4,327,310 to 4,327,663 Xcc-8004.4528.1 Xcc-8004.4529.1: Xcc-8004.4529.1 - FIG01210979: hypothetical protein, at 4,327,853 to 4,328,188 Xcc-8004.4529.1 Xcc-8004.4530.1: Xcc-8004.4530.1 - Dethiobiotin synthetase (EC 6.3.3.3), at 4,328,342 to 4,329,016 Xcc-8004.4530.1 Position (kb) 4327 4328Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4326.737 kb on - strand, within Xcc-8004.4527.1at 4326.766 kb on + strand, within Xcc-8004.4527.1at 4326.766 kb on + strand, within Xcc-8004.4527.1at 4326.766 kb on + strand, within Xcc-8004.4527.1at 4326.766 kb on + strand, within Xcc-8004.4527.1at 4326.766 kb on + strand, within Xcc-8004.4527.1at 4326.766 kb on + strand, within Xcc-8004.4527.1at 4326.766 kb on + strand, within Xcc-8004.4527.1at 4326.766 kb on + strand, within Xcc-8004.4527.1at 4326.766 kb on + strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.767 kb on - strand, within Xcc-8004.4527.1at 4326.793 kb on + strand, within Xcc-8004.4527.1at 4326.793 kb on + strand, within Xcc-8004.4527.1at 4326.794 kb on - strand, within Xcc-8004.4527.1at 4326.794 kb on - strand, within Xcc-8004.4527.1at 4326.794 kb on - strand, within Xcc-8004.4527.1at 4326.794 kb on - strand, within Xcc-8004.4527.1at 4326.794 kb on - strand, within Xcc-8004.4527.1at 4326.794 kb on - strand, within Xcc-8004.4527.1at 4326.794 kb on - strand, within Xcc-8004.4527.1at 4326.794 kb on - strand, within Xcc-8004.4527.1at 4326.934 kb on + strand, within Xcc-8004.4527.1at 4327.193 kb on - strandat 4327.315 kb on + strandat 4327.315 kb on + strandat 4327.315 kb on + strandat 4327.315 kb on + strandat 4327.316 kb on - strandat 4327.316 kb on - strandat 4327.316 kb on - strandat 4327.316 kb on - strandat 4327.326 kb on + strandat 4327.326 kb on + strandat 4327.327 kb on - strandat 4327.327 kb on - strandat 4327.327 kb on - strandat 4327.327 kb on - strandat 4327.327 kb on - strandat 4327.327 kb on - strandat 4327.327 kb on - strandat 4327.331 kb on - strandat 4327.331 kb on - strandat 4327.375 kb on + strand, within Xcc-8004.4528.1at 4327.375 kb on + strand, within Xcc-8004.4528.1at 4327.375 kb on + strand, within Xcc-8004.4528.1at 4327.375 kb on + strand, within Xcc-8004.4528.1at 4327.375 kb on + strand, within Xcc-8004.4528.1at 4327.375 kb on + strand, within Xcc-8004.4528.1at 4327.375 kb on + strand, within Xcc-8004.4528.1at 4327.375 kb on + strand, within Xcc-8004.4528.1at 4327.375 kb on + strand, within Xcc-8004.4528.1at 4327.376 kb on - strand, within Xcc-8004.4528.1at 4327.376 kb on - strand, within Xcc-8004.4528.1at 4327.376 kb on - strand, within Xcc-8004.4528.1at 4327.376 kb on - strand, within Xcc-8004.4528.1at 4327.376 kb on - strand, within Xcc-8004.4528.1at 4327.376 kb on - strand, within Xcc-8004.4528.1at 4327.376 kb on - strand, within Xcc-8004.4528.1at 4327.496 kb on + strand, within Xcc-8004.4528.1at 4327.496 kb on + strand, within Xcc-8004.4528.1at 4327.496 kb on + strand, within Xcc-8004.4528.1at 4327.496 kb on + strand, within Xcc-8004.4528.1at 4327.497 kb on - strand, within Xcc-8004.4528.1at 4327.497 kb on - strand, within Xcc-8004.4528.1at 4327.497 kb on - strand, within Xcc-8004.4528.1at 4327.497 kb on - strand, within Xcc-8004.4528.1at 4327.497 kb on - strand, within Xcc-8004.4528.1at 4327.497 kb on - strand, within Xcc-8004.4528.1at 4327.497 kb on - strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.517 kb on + strand, within Xcc-8004.4528.1at 4327.518 kb on - strand, within Xcc-8004.4528.1at 4327.518 kb on - strand, within Xcc-8004.4528.1at 4327.518 kb on - strand, within Xcc-8004.4528.1at 4327.518 kb on - strand, within Xcc-8004.4528.1at 4327.518 kb on - strand, within Xcc-8004.4528.1at 4327.518 kb on - strand, within Xcc-8004.4528.1at 4327.805 kb on + strandat 4328.003 kb on + strand, within Xcc-8004.4529.1at 4328.003 kb on + strand, within Xcc-8004.4529.1at 4328.186 kb on + strandat 4328.186 kb on + strandat 4328.186 kb on + strandat 4328.186 kb on + strandat 4328.186 kb on + strandat 4328.187 kb on - strandat 4328.275 kb on - strandat 4328.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,326,737 - Xcc-8004.4527.1 0.67 +0.1
4,326,766 + Xcc-8004.4527.1 0.69 +0.2
4,326,766 + Xcc-8004.4527.1 0.69 -1.7
4,326,766 + Xcc-8004.4527.1 0.69 +2.3
4,326,766 + Xcc-8004.4527.1 0.69 +1.9
4,326,766 + Xcc-8004.4527.1 0.69 -0.7
4,326,766 + Xcc-8004.4527.1 0.69 -1.7
4,326,766 + Xcc-8004.4527.1 0.69 -0.7
4,326,766 + Xcc-8004.4527.1 0.69 -0.4
4,326,766 + Xcc-8004.4527.1 0.69 +0.3
4,326,767 - Xcc-8004.4527.1 0.69 -0.4
4,326,767 - Xcc-8004.4527.1 0.69 +0.1
4,326,767 - Xcc-8004.4527.1 0.69 -2.4
4,326,767 - Xcc-8004.4527.1 0.69 -2.1
4,326,767 - Xcc-8004.4527.1 0.69 -2.8
4,326,767 - Xcc-8004.4527.1 0.69 -1.4
4,326,767 - Xcc-8004.4527.1 0.69 -1.1
4,326,767 - Xcc-8004.4527.1 0.69 -4.0
4,326,767 - Xcc-8004.4527.1 0.69 -2.1
4,326,767 - Xcc-8004.4527.1 0.69 +2.6
4,326,793 + Xcc-8004.4527.1 0.71 -2.7
4,326,793 + Xcc-8004.4527.1 0.71 +1.3
4,326,794 - Xcc-8004.4527.1 0.71 +0.2
4,326,794 - Xcc-8004.4527.1 0.71 -0.6
4,326,794 - Xcc-8004.4527.1 0.71 -1.1
4,326,794 - Xcc-8004.4527.1 0.71 -0.4
4,326,794 - Xcc-8004.4527.1 0.71 +1.0
4,326,794 - Xcc-8004.4527.1 0.71 -1.1
4,326,794 - Xcc-8004.4527.1 0.71 -0.3
4,326,794 - Xcc-8004.4527.1 0.71 -1.4
4,326,934 + Xcc-8004.4527.1 0.81 -0.6
4,327,193 - -0.6
4,327,315 + -1.5
4,327,315 + -0.8
4,327,315 + +0.0
4,327,315 + +0.3
4,327,316 - +0.0
4,327,316 - +3.3
4,327,316 - +0.2
4,327,316 - +2.3
4,327,326 + -1.0
4,327,326 + +0.6
4,327,327 - +1.0
4,327,327 - -3.0
4,327,327 - -1.3
4,327,327 - -1.4
4,327,327 - +1.1
4,327,327 - +0.4
4,327,327 - -1.3
4,327,331 - -0.2
4,327,331 - -0.5
4,327,375 + Xcc-8004.4528.1 0.18 +0.8
4,327,375 + Xcc-8004.4528.1 0.18 -0.3
4,327,375 + Xcc-8004.4528.1 0.18 -0.1
4,327,375 + Xcc-8004.4528.1 0.18 -1.5
4,327,375 + Xcc-8004.4528.1 0.18 +0.3
4,327,375 + Xcc-8004.4528.1 0.18 -0.4
4,327,375 + Xcc-8004.4528.1 0.18 +0.3
4,327,375 + Xcc-8004.4528.1 0.18 -1.5
4,327,375 + Xcc-8004.4528.1 0.18 -0.4
4,327,376 - Xcc-8004.4528.1 0.19 -2.3
4,327,376 - Xcc-8004.4528.1 0.19 +0.5
4,327,376 - Xcc-8004.4528.1 0.19 +2.1
4,327,376 - Xcc-8004.4528.1 0.19 -0.4
4,327,376 - Xcc-8004.4528.1 0.19 -1.5
4,327,376 - Xcc-8004.4528.1 0.19 -0.6
4,327,376 - Xcc-8004.4528.1 0.19 -1.0
4,327,496 + Xcc-8004.4528.1 0.53 -2.3
4,327,496 + Xcc-8004.4528.1 0.53 +1.4
4,327,496 + Xcc-8004.4528.1 0.53 +0.1
4,327,496 + Xcc-8004.4528.1 0.53 +0.6
4,327,497 - Xcc-8004.4528.1 0.53 -1.9
4,327,497 - Xcc-8004.4528.1 0.53 +0.4
4,327,497 - Xcc-8004.4528.1 0.53 -1.6
4,327,497 - Xcc-8004.4528.1 0.53 +0.1
4,327,497 - Xcc-8004.4528.1 0.53 +0.4
4,327,497 - Xcc-8004.4528.1 0.53 -0.1
4,327,497 - Xcc-8004.4528.1 0.53 +0.2
4,327,517 + Xcc-8004.4528.1 0.58 +0.0
4,327,517 + Xcc-8004.4528.1 0.58 +0.3
4,327,517 + Xcc-8004.4528.1 0.58 -0.7
4,327,517 + Xcc-8004.4528.1 0.58 -0.5
4,327,517 + Xcc-8004.4528.1 0.58 -0.8
4,327,517 + Xcc-8004.4528.1 0.58 +1.2
4,327,517 + Xcc-8004.4528.1 0.58 -0.2
4,327,517 + Xcc-8004.4528.1 0.58 +0.5
4,327,517 + Xcc-8004.4528.1 0.58 -1.6
4,327,517 + Xcc-8004.4528.1 0.58 +0.7
4,327,517 + Xcc-8004.4528.1 0.58 +1.2
4,327,517 + Xcc-8004.4528.1 0.58 +0.7
4,327,518 - Xcc-8004.4528.1 0.59 -2.3
4,327,518 - Xcc-8004.4528.1 0.59 -1.2
4,327,518 - Xcc-8004.4528.1 0.59 -0.1
4,327,518 - Xcc-8004.4528.1 0.59 +0.6
4,327,518 - Xcc-8004.4528.1 0.59 +0.5
4,327,518 - Xcc-8004.4528.1 0.59 -1.0
4,327,805 + +0.6
4,328,003 + Xcc-8004.4529.1 0.45 -0.2
4,328,003 + Xcc-8004.4529.1 0.45 -1.3
4,328,186 + +1.1
4,328,186 + -2.1
4,328,186 + -0.1
4,328,186 + +0.8
4,328,186 + -0.3
4,328,187 - +0.7
4,328,275 - -1.6
4,328,275 - +0.5

Or see this region's nucleotide sequence