Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3786.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3784.1 and Xcc-8004.3785.1 overlap by 4 nucleotidesXcc-8004.3785.1 and Xcc-8004.3786.1 overlap by 4 nucleotidesXcc-8004.3786.1 and Xcc-8004.3787.1 overlap by 4 nucleotides Xcc-8004.3784.1: Xcc-8004.3784.1 - Signal transduction histidine kinase, at 3,658,134 to 3,661,274 Xcc-8004.3784.1 Xcc-8004.3785.1: Xcc-8004.3785.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,661,271 to 3,662,095 Xcc-8004.3785.1 Xcc-8004.3786.1: Xcc-8004.3786.1 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 3,662,092 to 3,662,679 Xcc-8004.3786.1 Xcc-8004.3787.1: Xcc-8004.3787.1 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 3,662,676 to 3,663,800 Xcc-8004.3787.1 Position (kb) 3662 3663Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3661.207 kb on - strandat 3661.207 kb on - strandat 3661.207 kb on - strandat 3661.566 kb on - strand, within Xcc-8004.3785.1at 3661.722 kb on - strand, within Xcc-8004.3785.1at 3661.758 kb on - strand, within Xcc-8004.3785.1at 3661.758 kb on - strand, within Xcc-8004.3785.1at 3661.847 kb on - strand, within Xcc-8004.3785.1at 3661.929 kb on - strand, within Xcc-8004.3785.1at 3661.929 kb on - strand, within Xcc-8004.3785.1at 3661.971 kb on - strand, within Xcc-8004.3785.1at 3662.113 kb on + strandat 3662.114 kb on - strandat 3662.114 kb on - strandat 3662.354 kb on - strand, within Xcc-8004.3786.1at 3662.354 kb on - strand, within Xcc-8004.3786.1at 3662.354 kb on - strand, within Xcc-8004.3786.1at 3663.000 kb on + strand, within Xcc-8004.3787.1at 3663.085 kb on - strand, within Xcc-8004.3787.1at 3663.085 kb on - strand, within Xcc-8004.3787.1at 3663.085 kb on - strand, within Xcc-8004.3787.1at 3663.085 kb on - strand, within Xcc-8004.3787.1at 3663.425 kb on + strand, within Xcc-8004.3787.1at 3663.425 kb on + strand, within Xcc-8004.3787.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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3,661,207 - -0.1
3,661,207 - +0.6
3,661,207 - -1.3
3,661,566 - Xcc-8004.3785.1 0.36 +0.6
3,661,722 - Xcc-8004.3785.1 0.55 -0.5
3,661,758 - Xcc-8004.3785.1 0.59 +0.2
3,661,758 - Xcc-8004.3785.1 0.59 -2.2
3,661,847 - Xcc-8004.3785.1 0.70 -0.1
3,661,929 - Xcc-8004.3785.1 0.80 +1.0
3,661,929 - Xcc-8004.3785.1 0.80 +1.4
3,661,971 - Xcc-8004.3785.1 0.85 +0.7
3,662,113 + -1.0
3,662,114 - +2.6
3,662,114 - +1.5
3,662,354 - Xcc-8004.3786.1 0.45 -1.5
3,662,354 - Xcc-8004.3786.1 0.45 +0.6
3,662,354 - Xcc-8004.3786.1 0.45 +1.0
3,663,000 + Xcc-8004.3787.1 0.29 +0.8
3,663,085 - Xcc-8004.3787.1 0.36 +1.8
3,663,085 - Xcc-8004.3787.1 0.36 -0.9
3,663,085 - Xcc-8004.3787.1 0.36 -0.0
3,663,085 - Xcc-8004.3787.1 0.36 +0.2
3,663,425 + Xcc-8004.3787.1 0.67 +0.3
3,663,425 + Xcc-8004.3787.1 0.67 +3.1

Or see this region's nucleotide sequence