Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00370

Experiment: H2 N-free with 10mM Gly-Glu

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00365 and MMP_RS00370 are separated by 391 nucleotidesMMP_RS00370 and MMP_RS00375 are separated by 26 nucleotides MMP_RS00365: MMP_RS00365 - acetylglutamate kinase, at 75,475 to 76,359 _RS00365 MMP_RS00370: MMP_RS00370 - P-II family nitrogen regulator, at 76,751 to 77,089 _RS00370 MMP_RS00375: MMP_RS00375 - ammonium transporter, at 77,116 to 78,342 _RS00375 Position (kb) 76 77 78Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 75.783 kb on + strandat 75.962 kb on - strandat 75.968 kb on - strandat 76.097 kb on - strandat 76.350 kb on + strandat 76.402 kb on + strandat 76.413 kb on + strandat 76.418 kb on - strandat 76.469 kb on - strandat 76.470 kb on + strandat 76.475 kb on - strandat 76.475 kb on - strandat 76.479 kb on - strandat 76.496 kb on - strandat 76.497 kb on + strandat 76.497 kb on + strandat 76.551 kb on - strandat 76.552 kb on + strandat 76.571 kb on + strandat 76.634 kb on - strandat 76.635 kb on + strandat 76.636 kb on - strandat 76.636 kb on - strandat 76.636 kb on - strandat 76.637 kb on + strandat 76.768 kb on - strandat 77.037 kb on - strandat 77.076 kb on - strandat 77.193 kb on + strandat 77.201 kb on - strandat 77.204 kb on - strandat 77.205 kb on + strandat 77.292 kb on + strand, within MMP_RS00375at 77.405 kb on - strand, within MMP_RS00375at 77.535 kb on + strand, within MMP_RS00375at 77.565 kb on + strand, within MMP_RS00375at 77.695 kb on + strand, within MMP_RS00375at 77.829 kb on - strand, within MMP_RS00375at 77.830 kb on + strand, within MMP_RS00375at 77.830 kb on + strand, within MMP_RS00375at 77.841 kb on + strand, within MMP_RS00375at 77.844 kb on + strand, within MMP_RS00375at 77.912 kb on - strand, within MMP_RS00375at 77.913 kb on + strand, within MMP_RS00375at 77.945 kb on - strand, within MMP_RS00375at 77.975 kb on - strand, within MMP_RS00375at 77.984 kb on - strand, within MMP_RS00375at 78.068 kb on - strand, within MMP_RS00375

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Gly-Glu
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75,783 + -1.0
75,962 - -4.7
75,968 - -2.8
76,097 - -2.8
76,350 + -4.1
76,402 + +0.0
76,413 + +0.4
76,418 - +0.3
76,469 - -3.2
76,470 + -2.7
76,475 - +1.3
76,475 - +0.9
76,479 - +0.8
76,496 - -0.3
76,497 + -0.2
76,497 + +0.4
76,551 - +0.7
76,552 + -0.7
76,571 + +0.9
76,634 - +1.9
76,635 + +1.7
76,636 - +0.9
76,636 - +1.9
76,636 - +1.9
76,637 + +1.8
76,768 - +0.5
77,037 - +1.3
77,076 - -0.9
77,193 + +2.9
77,201 - +1.5
77,204 - +2.9
77,205 + +2.0
77,292 + MMP_RS00375 0.14 +1.3
77,405 - MMP_RS00375 0.24 +1.9
77,535 + MMP_RS00375 0.34 +2.2
77,565 + MMP_RS00375 0.37 +2.2
77,695 + MMP_RS00375 0.47 +2.2
77,829 - MMP_RS00375 0.58 +2.5
77,830 + MMP_RS00375 0.58 +2.2
77,830 + MMP_RS00375 0.58 +2.9
77,841 + MMP_RS00375 0.59 +2.7
77,844 + MMP_RS00375 0.59 +1.6
77,912 - MMP_RS00375 0.65 +2.9
77,913 + MMP_RS00375 0.65 +2.1
77,945 - MMP_RS00375 0.68 +3.2
77,975 - MMP_RS00375 0.70 +2.6
77,984 - MMP_RS00375 0.71 +2.2
78,068 - MMP_RS00375 0.78 +2.1

Or see this region's nucleotide sequence