Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19980 and IAI47_19985 are separated by 1 nucleotides IAI47_19985 and IAI47_19990 are separated by 1 nucleotides
IAI47_19980: IAI47_19980 - GNAT family N-acetyltransferase, at 225,813 to 228,167
_19980
IAI47_19985: IAI47_19985 - lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein, at 228,169 to 229,461
_19985
IAI47_19990: IAI47_19990 - aspartate aminotransferase family protein, at 229,463 to 231,025
_19990
Position (kb) 228
229
230 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 227.204 kb on + strand, within IAI47_19980 at 227.205 kb on - strand, within IAI47_19980 at 227.205 kb on - strand, within IAI47_19980 at 227.222 kb on - strand, within IAI47_19980 at 227.258 kb on + strand, within IAI47_19980 at 227.259 kb on - strand, within IAI47_19980 at 227.259 kb on - strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.260 kb on + strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.261 kb on - strand, within IAI47_19980 at 227.312 kb on + strand, within IAI47_19980 at 227.312 kb on + strand, within IAI47_19980 at 227.313 kb on - strand, within IAI47_19980 at 227.361 kb on + strand, within IAI47_19980 at 227.420 kb on - strand, within IAI47_19980 at 227.420 kb on - strand, within IAI47_19980 at 227.452 kb on + strand, within IAI47_19980 at 227.452 kb on + strand, within IAI47_19980 at 227.452 kb on + strand, within IAI47_19980 at 227.453 kb on - strand, within IAI47_19980 at 227.453 kb on - strand, within IAI47_19980 at 227.453 kb on - strand, within IAI47_19980 at 227.591 kb on + strand, within IAI47_19980 at 227.591 kb on + strand, within IAI47_19980 at 227.591 kb on + strand, within IAI47_19980 at 227.591 kb on + strand, within IAI47_19980 at 227.591 kb on + strand, within IAI47_19980 at 227.592 kb on - strand, within IAI47_19980 at 227.592 kb on - strand, within IAI47_19980 at 227.597 kb on + strand, within IAI47_19980 at 227.598 kb on - strand, within IAI47_19980 at 227.616 kb on + strand, within IAI47_19980 at 227.667 kb on - strand, within IAI47_19980 at 227.711 kb on + strand, within IAI47_19980 at 227.752 kb on - strand, within IAI47_19980 at 227.752 kb on - strand, within IAI47_19980 at 227.788 kb on + strand, within IAI47_19980 at 227.788 kb on + strand, within IAI47_19980 at 227.788 kb on + strand, within IAI47_19980 at 227.788 kb on + strand, within IAI47_19980 at 227.788 kb on + strand, within IAI47_19980 at 227.788 kb on + strand, within IAI47_19980 at 227.788 kb on + strand, within IAI47_19980 at 227.789 kb on - strand, within IAI47_19980 at 227.789 kb on - strand, within IAI47_19980 at 227.789 kb on - strand, within IAI47_19980 at 227.789 kb on - strand, within IAI47_19980 at 227.789 kb on - strand, within IAI47_19980 at 227.789 kb on - strand, within IAI47_19980 at 227.789 kb on - strand, within IAI47_19980 at 227.819 kb on + strand, within IAI47_19980 at 227.819 kb on + strand, within IAI47_19980 at 227.820 kb on - strand, within IAI47_19980 at 227.820 kb on - strand, within IAI47_19980 at 227.869 kb on + strand, within IAI47_19980 at 227.869 kb on + strand, within IAI47_19980 at 227.870 kb on - strand, within IAI47_19980 at 228.004 kb on + strand at 228.004 kb on + strand at 228.005 kb on - strand at 228.005 kb on - strand at 228.153 kb on + strand at 228.154 kb on - strand at 228.224 kb on + strand at 228.224 kb on + strand at 228.224 kb on + strand at 228.224 kb on + strand at 228.269 kb on + strand at 228.310 kb on - strand, within IAI47_19985 at 228.359 kb on + strand, within IAI47_19985 at 228.359 kb on + strand, within IAI47_19985 at 228.359 kb on + strand, within IAI47_19985 at 228.359 kb on + strand, within IAI47_19985 at 228.360 kb on - strand, within IAI47_19985 at 228.378 kb on - strand, within IAI47_19985 at 228.378 kb on - strand, within IAI47_19985 at 228.421 kb on + strand, within IAI47_19985 at 228.440 kb on + strand, within IAI47_19985 at 228.446 kb on + strand, within IAI47_19985 at 228.549 kb on + strand, within IAI47_19985 at 228.555 kb on + strand, within IAI47_19985 at 228.570 kb on + strand, within IAI47_19985 at 228.571 kb on - strand, within IAI47_19985 at 228.611 kb on + strand, within IAI47_19985 at 228.611 kb on + strand, within IAI47_19985 at 228.611 kb on + strand, within IAI47_19985 at 228.611 kb on + strand, within IAI47_19985 at 228.611 kb on + strand, within IAI47_19985 at 228.611 kb on + strand, within IAI47_19985 at 228.611 kb on + strand, within IAI47_19985 at 228.611 kb on + strand, within IAI47_19985 at 228.611 kb on + strand, within IAI47_19985 at 228.612 kb on - strand, within IAI47_19985 at 228.612 kb on - strand, within IAI47_19985 at 228.612 kb on - strand, within IAI47_19985 at 228.612 kb on - strand, within IAI47_19985 at 228.612 kb on - strand, within IAI47_19985 at 228.612 kb on - strand, within IAI47_19985 at 228.612 kb on - strand, within IAI47_19985 at 228.612 kb on - strand, within IAI47_19985 at 228.612 kb on - strand, within IAI47_19985 at 228.623 kb on + strand, within IAI47_19985 at 228.624 kb on - strand, within IAI47_19985 at 228.637 kb on + strand, within IAI47_19985 at 228.637 kb on + strand, within IAI47_19985 at 228.637 kb on + strand, within IAI47_19985 at 228.638 kb on - strand, within IAI47_19985 at 228.638 kb on - strand, within IAI47_19985 at 228.648 kb on + strand, within IAI47_19985 at 228.648 kb on + strand, within IAI47_19985 at 228.649 kb on - strand, within IAI47_19985 at 228.660 kb on - strand, within IAI47_19985 at 228.719 kb on + strand, within IAI47_19985 at 228.719 kb on + strand, within IAI47_19985 at 228.719 kb on + strand, within IAI47_19985 at 228.720 kb on - strand, within IAI47_19985 at 228.720 kb on - strand, within IAI47_19985 at 228.764 kb on + strand, within IAI47_19985 at 228.765 kb on - strand, within IAI47_19985 at 228.765 kb on - strand, within IAI47_19985 at 228.765 kb on - strand, within IAI47_19985 at 228.776 kb on + strand, within IAI47_19985 at 228.845 kb on + strand, within IAI47_19985 at 228.845 kb on + strand, within IAI47_19985 at 228.846 kb on - strand, within IAI47_19985 at 228.848 kb on + strand, within IAI47_19985 at 228.886 kb on - strand, within IAI47_19985 at 228.926 kb on + strand, within IAI47_19985 at 228.927 kb on - strand, within IAI47_19985 at 229.067 kb on + strand, within IAI47_19985 at 229.068 kb on - strand, within IAI47_19985 at 229.068 kb on - strand, within IAI47_19985 at 229.088 kb on + strand, within IAI47_19985 at 229.089 kb on - strand, within IAI47_19985 at 229.097 kb on + strand, within IAI47_19985 at 229.097 kb on + strand, within IAI47_19985 at 229.097 kb on + strand, within IAI47_19985 at 229.097 kb on + strand, within IAI47_19985 at 229.097 kb on + strand, within IAI47_19985 at 229.097 kb on + strand, within IAI47_19985 at 229.098 kb on - strand, within IAI47_19985 at 229.098 kb on - strand, within IAI47_19985 at 229.125 kb on + strand, within IAI47_19985 at 229.126 kb on - strand, within IAI47_19985 at 229.161 kb on + strand, within IAI47_19985 at 229.162 kb on - strand, within IAI47_19985 at 229.164 kb on - strand, within IAI47_19985 at 229.164 kb on - strand, within IAI47_19985 at 229.164 kb on - strand, within IAI47_19985 at 229.197 kb on + strand, within IAI47_19985 at 229.199 kb on + strand, within IAI47_19985 at 229.200 kb on - strand, within IAI47_19985 at 229.209 kb on - strand, within IAI47_19985 at 229.232 kb on + strand, within IAI47_19985 at 229.233 kb on - strand, within IAI47_19985 at 229.236 kb on + strand, within IAI47_19985 at 229.236 kb on + strand at 229.237 kb on - strand, within IAI47_19985 at 229.248 kb on - strand, within IAI47_19985 at 229.287 kb on + strand, within IAI47_19985 at 229.365 kb on + strand at 229.365 kb on + strand at 229.366 kb on - strand at 229.438 kb on - strand at 229.438 kb on - strand at 229.456 kb on - strand at 229.456 kb on - strand at 229.522 kb on - strand at 229.577 kb on + strand at 229.577 kb on + strand at 229.578 kb on - strand at 229.578 kb on - strand at 229.597 kb on - strand at 229.597 kb on - strand at 229.637 kb on - strand, within IAI47_19990 at 229.649 kb on + strand, within IAI47_19990 at 229.649 kb on + strand, within IAI47_19990 at 229.649 kb on + strand, within IAI47_19990 at 229.650 kb on - strand, within IAI47_19990 at 229.657 kb on + strand, within IAI47_19990 at 229.716 kb on + strand, within IAI47_19990 at 229.782 kb on - strand, within IAI47_19990 at 229.782 kb on - strand, within IAI47_19990 at 229.960 kb on - strand, within IAI47_19990 at 230.050 kb on - strand, within IAI47_19990 at 230.098 kb on + strand, within IAI47_19990 at 230.130 kb on + strand, within IAI47_19990 at 230.131 kb on - strand, within IAI47_19990 at 230.153 kb on + strand, within IAI47_19990 at 230.154 kb on - strand, within IAI47_19990 at 230.160 kb on + strand, within IAI47_19990 at 230.161 kb on - strand, within IAI47_19990 at 230.249 kb on + strand, within IAI47_19990 at 230.249 kb on + strand, within IAI47_19990 at 230.250 kb on - strand, within IAI47_19990 at 230.344 kb on - strand, within IAI47_19990 at 230.401 kb on + strand, within IAI47_19990 at 230.446 kb on + strand, within IAI47_19990 at 230.447 kb on - strand, within IAI47_19990
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 remove 227,204 + IAI47_19980 0.59 -1.4 227,205 - IAI47_19980 0.59 +0.8 227,205 - IAI47_19980 0.59 +0.0 227,222 - IAI47_19980 0.60 -1.8 227,258 + IAI47_19980 0.61 +0.4 227,259 - IAI47_19980 0.61 +0.1 227,259 - IAI47_19980 0.61 +0.1 227,260 + IAI47_19980 0.61 +1.2 227,260 + IAI47_19980 0.61 -1.6 227,260 + IAI47_19980 0.61 -0.5 227,260 + IAI47_19980 0.61 -1.1 227,260 + IAI47_19980 0.61 +0.7 227,260 + IAI47_19980 0.61 +0.6 227,260 + IAI47_19980 0.61 +0.7 227,260 + IAI47_19980 0.61 +0.6 227,260 + IAI47_19980 0.61 -1.1 227,260 + IAI47_19980 0.61 -1.1 227,260 + IAI47_19980 0.61 -1.5 227,260 + IAI47_19980 0.61 -1.8 227,260 + IAI47_19980 0.61 +0.5 227,261 - IAI47_19980 0.61 -0.2 227,261 - IAI47_19980 0.61 -0.3 227,261 - IAI47_19980 0.61 -0.2 227,261 - IAI47_19980 0.61 +0.2 227,261 - IAI47_19980 0.61 -1.3 227,261 - IAI47_19980 0.61 +0.7 227,261 - IAI47_19980 0.61 -0.3 227,261 - IAI47_19980 0.61 +1.0 227,261 - IAI47_19980 0.61 +0.5 227,261 - IAI47_19980 0.61 -2.6 227,261 - IAI47_19980 0.61 -0.5 227,261 - IAI47_19980 0.61 +1.1 227,312 + IAI47_19980 0.64 -1.2 227,312 + IAI47_19980 0.64 -0.2 227,313 - IAI47_19980 0.64 -0.0 227,361 + IAI47_19980 0.66 +0.1 227,420 - IAI47_19980 0.68 -1.4 227,420 - IAI47_19980 0.68 +1.4 227,452 + IAI47_19980 0.70 +1.5 227,452 + IAI47_19980 0.70 +0.3 227,452 + IAI47_19980 0.70 +0.9 227,453 - IAI47_19980 0.70 +0.9 227,453 - IAI47_19980 0.70 +1.0 227,453 - IAI47_19980 0.70 +0.1 227,591 + IAI47_19980 0.75 -1.0 227,591 + IAI47_19980 0.75 +0.5 227,591 + IAI47_19980 0.75 +0.9 227,591 + IAI47_19980 0.75 +0.3 227,591 + IAI47_19980 0.75 -0.5 227,592 - IAI47_19980 0.76 +0.3 227,592 - IAI47_19980 0.76 +1.4 227,597 + IAI47_19980 0.76 -0.3 227,598 - IAI47_19980 0.76 +0.5 227,616 + IAI47_19980 0.77 -0.5 227,667 - IAI47_19980 0.79 +0.5 227,711 + IAI47_19980 0.81 +0.1 227,752 - IAI47_19980 0.82 -0.9 227,752 - IAI47_19980 0.82 -0.4 227,788 + IAI47_19980 0.84 -0.7 227,788 + IAI47_19980 0.84 -0.9 227,788 + IAI47_19980 0.84 -0.3 227,788 + IAI47_19980 0.84 -1.6 227,788 + IAI47_19980 0.84 +0.7 227,788 + IAI47_19980 0.84 +1.2 227,788 + IAI47_19980 0.84 -1.5 227,789 - IAI47_19980 0.84 +0.4 227,789 - IAI47_19980 0.84 -0.3 227,789 - IAI47_19980 0.84 +1.2 227,789 - IAI47_19980 0.84 +0.0 227,789 - IAI47_19980 0.84 +0.4 227,789 - IAI47_19980 0.84 +0.2 227,789 - IAI47_19980 0.84 +0.9 227,819 + IAI47_19980 0.85 +1.8 227,819 + IAI47_19980 0.85 +1.7 227,820 - IAI47_19980 0.85 +0.4 227,820 - IAI47_19980 0.85 -0.8 227,869 + IAI47_19980 0.87 +1.6 227,869 + IAI47_19980 0.87 +0.2 227,870 - IAI47_19980 0.87 -0.1 228,004 + +1.0 228,004 + +1.5 228,005 - +1.4 228,005 - -1.5 228,153 + -0.5 228,154 - +1.4 228,224 + -1.1 228,224 + +0.6 228,224 + +1.4 228,224 + -0.9 228,269 + +1.1 228,310 - IAI47_19985 0.11 -0.2 228,359 + IAI47_19985 0.15 +1.6 228,359 + IAI47_19985 0.15 -0.0 228,359 + IAI47_19985 0.15 -0.3 228,359 + IAI47_19985 0.15 -1.1 228,360 - IAI47_19985 0.15 +1.9 228,378 - IAI47_19985 0.16 -0.9 228,378 - IAI47_19985 0.16 -1.1 228,421 + IAI47_19985 0.19 +0.4 228,440 + IAI47_19985 0.21 +0.1 228,446 + IAI47_19985 0.21 +0.0 228,549 + IAI47_19985 0.29 +0.5 228,555 + IAI47_19985 0.30 -1.1 228,570 + IAI47_19985 0.31 +0.6 228,571 - IAI47_19985 0.31 +0.0 228,611 + IAI47_19985 0.34 -0.4 228,611 + IAI47_19985 0.34 -0.1 228,611 + IAI47_19985 0.34 -1.1 228,611 + IAI47_19985 0.34 -0.6 228,611 + IAI47_19985 0.34 -0.6 228,611 + IAI47_19985 0.34 -0.6 228,611 + IAI47_19985 0.34 +1.4 228,611 + IAI47_19985 0.34 +1.1 228,611 + IAI47_19985 0.34 +1.6 228,612 - IAI47_19985 0.34 +0.5 228,612 - IAI47_19985 0.34 +1.0 228,612 - IAI47_19985 0.34 +0.5 228,612 - IAI47_19985 0.34 +0.4 228,612 - IAI47_19985 0.34 -0.4 228,612 - IAI47_19985 0.34 -0.0 228,612 - IAI47_19985 0.34 -0.2 228,612 - IAI47_19985 0.34 -0.0 228,612 - IAI47_19985 0.34 +1.1 228,623 + IAI47_19985 0.35 -0.2 228,624 - IAI47_19985 0.35 +1.2 228,637 + IAI47_19985 0.36 -1.0 228,637 + IAI47_19985 0.36 +1.4 228,637 + IAI47_19985 0.36 +1.5 228,638 - IAI47_19985 0.36 +3.1 228,638 - IAI47_19985 0.36 +0.6 228,648 + IAI47_19985 0.37 +0.3 228,648 + IAI47_19985 0.37 -2.0 228,649 - IAI47_19985 0.37 -0.6 228,660 - IAI47_19985 0.38 -0.5 228,719 + IAI47_19985 0.43 +0.7 228,719 + IAI47_19985 0.43 +0.2 228,719 + IAI47_19985 0.43 -0.3 228,720 - IAI47_19985 0.43 +1.9 228,720 - IAI47_19985 0.43 +4.5 228,764 + IAI47_19985 0.46 +0.6 228,765 - IAI47_19985 0.46 +1.1 228,765 - IAI47_19985 0.46 +1.6 228,765 - IAI47_19985 0.46 +0.1 228,776 + IAI47_19985 0.47 +0.7 228,845 + IAI47_19985 0.52 +0.9 228,845 + IAI47_19985 0.52 +0.1 228,846 - IAI47_19985 0.52 -0.5 228,848 + IAI47_19985 0.53 +0.7 228,886 - IAI47_19985 0.55 -0.6 228,926 + IAI47_19985 0.59 +0.5 228,927 - IAI47_19985 0.59 +2.1 229,067 + IAI47_19985 0.69 +0.3 229,068 - IAI47_19985 0.70 -0.1 229,068 - IAI47_19985 0.70 +0.0 229,088 + IAI47_19985 0.71 -1.1 229,089 - IAI47_19985 0.71 +1.4 229,097 + IAI47_19985 0.72 +1.0 229,097 + IAI47_19985 0.72 -0.8 229,097 + IAI47_19985 0.72 -0.1 229,097 + IAI47_19985 0.72 -0.8 229,097 + IAI47_19985 0.72 +0.3 229,097 + IAI47_19985 0.72 +0.7 229,098 - IAI47_19985 0.72 +0.9 229,098 - IAI47_19985 0.72 +0.4 229,125 + IAI47_19985 0.74 +2.5 229,126 - IAI47_19985 0.74 -0.6 229,161 + IAI47_19985 0.77 +0.4 229,162 - IAI47_19985 0.77 -0.1 229,164 - IAI47_19985 0.77 +0.1 229,164 - IAI47_19985 0.77 -0.4 229,164 - IAI47_19985 0.77 +1.4 229,197 + IAI47_19985 0.80 -0.2 229,199 + IAI47_19985 0.80 +0.2 229,200 - IAI47_19985 0.80 +0.9 229,209 - IAI47_19985 0.80 -1.2 229,232 + IAI47_19985 0.82 -0.1 229,233 - IAI47_19985 0.82 -1.1 229,236 + IAI47_19985 0.83 -0.5 229,236 + +0.8 229,237 - IAI47_19985 0.83 -0.1 229,248 - IAI47_19985 0.83 -0.3 229,287 + IAI47_19985 0.86 -0.3 229,365 + +0.0 229,365 + -0.6 229,366 - +1.2 229,438 - -0.4 229,438 - -1.6 229,456 - -0.4 229,456 - +1.1 229,522 - +0.8 229,577 + +0.5 229,577 + +0.8 229,578 - +0.4 229,578 - +0.8 229,597 - +0.4 229,597 - -0.8 229,637 - IAI47_19990 0.11 +0.7 229,649 + IAI47_19990 0.12 -0.2 229,649 + IAI47_19990 0.12 -1.3 229,649 + IAI47_19990 0.12 -0.5 229,650 - IAI47_19990 0.12 +0.9 229,657 + IAI47_19990 0.12 -0.6 229,716 + IAI47_19990 0.16 +0.3 229,782 - IAI47_19990 0.20 +0.4 229,782 - IAI47_19990 0.20 -0.2 229,960 - IAI47_19990 0.32 -0.6 230,050 - IAI47_19990 0.38 +0.8 230,098 + IAI47_19990 0.41 -1.1 230,130 + IAI47_19990 0.43 +0.9 230,131 - IAI47_19990 0.43 +0.9 230,153 + IAI47_19990 0.44 +1.9 230,154 - IAI47_19990 0.44 +0.8 230,160 + IAI47_19990 0.45 +0.2 230,161 - IAI47_19990 0.45 -0.1 230,249 + IAI47_19990 0.50 -0.0 230,249 + IAI47_19990 0.50 -1.2 230,250 - IAI47_19990 0.50 -0.1 230,344 - IAI47_19990 0.56 +0.4 230,401 + IAI47_19990 0.60 +0.1 230,446 + IAI47_19990 0.63 +1.2 230,447 - IAI47_19990 0.63 +3.3
Or see this region's nucleotide sequence