Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19345 and IAI47_19350 are separated by 49 nucleotides IAI47_19350 and IAI47_19355 are separated by 276 nucleotides IAI47_19355 and IAI47_19360 are separated by 8 nucleotides
IAI47_19345: IAI47_19345 - hypothetical protein, at 93,785 to 95,242
_19345
IAI47_19350: IAI47_19350 - DUF305 domain-containing protein, at 95,292 to 95,720
_19350
IAI47_19355: IAI47_19355 - response regulator, at 95,997 to 96,737
_19355
IAI47_19360: IAI47_19360 - HAMP domain-containing protein, at 96,746 to 98,050
_19360
Position (kb) 95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 94.999 kb on + strand, within IAI47_19345 at 94.999 kb on + strand, within IAI47_19345 at 94.999 kb on + strand, within IAI47_19345 at 94.999 kb on + strand, within IAI47_19345 at 94.999 kb on + strand, within IAI47_19345 at 95.000 kb on - strand, within IAI47_19345 at 95.000 kb on - strand, within IAI47_19345 at 95.000 kb on - strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.002 kb on - strand, within IAI47_19345 at 95.002 kb on - strand, within IAI47_19345 at 95.011 kb on + strand, within IAI47_19345 at 95.011 kb on + strand, within IAI47_19345 at 95.011 kb on + strand, within IAI47_19345 at 95.012 kb on - strand, within IAI47_19345 at 95.012 kb on - strand, within IAI47_19345 at 95.012 kb on - strand, within IAI47_19345 at 95.041 kb on + strand, within IAI47_19345 at 95.041 kb on + strand, within IAI47_19345 at 95.042 kb on - strand, within IAI47_19345 at 95.042 kb on - strand, within IAI47_19345 at 95.059 kb on + strand, within IAI47_19345 at 95.059 kb on + strand, within IAI47_19345 at 95.059 kb on + strand, within IAI47_19345 at 95.160 kb on + strand at 95.160 kb on + strand at 95.160 kb on + strand at 95.161 kb on - strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.226 kb on - strand at 95.258 kb on - strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.370 kb on - strand, within IAI47_19350 at 95.370 kb on - strand, within IAI47_19350 at 95.383 kb on + strand, within IAI47_19350 at 95.384 kb on - strand, within IAI47_19350 at 95.384 kb on - strand, within IAI47_19350 at 95.384 kb on - strand, within IAI47_19350 at 95.432 kb on + strand, within IAI47_19350 at 95.433 kb on - strand, within IAI47_19350 at 95.481 kb on - strand, within IAI47_19350 at 95.544 kb on - strand, within IAI47_19350 at 95.552 kb on + strand, within IAI47_19350 at 95.579 kb on + strand, within IAI47_19350 at 95.579 kb on + strand, within IAI47_19350 at 95.579 kb on + strand, within IAI47_19350 at 95.580 kb on - strand, within IAI47_19350 at 95.580 kb on - strand, within IAI47_19350 at 95.684 kb on + strand at 95.684 kb on + strand at 95.684 kb on + strand at 95.685 kb on - strand at 95.685 kb on - strand at 95.685 kb on - strand at 95.687 kb on + strand at 95.688 kb on - strand at 95.688 kb on - strand at 95.688 kb on - strand at 95.711 kb on + strand at 95.712 kb on - strand at 95.720 kb on + strand at 95.720 kb on + strand at 95.720 kb on + strand at 95.720 kb on + strand at 95.721 kb on - strand at 95.721 kb on - strand at 95.721 kb on - strand at 95.732 kb on + strand at 95.770 kb on + strand at 95.770 kb on + strand at 95.770 kb on + strand at 95.772 kb on + strand at 95.772 kb on + strand at 95.773 kb on - strand at 95.773 kb on - strand at 95.794 kb on + strand at 95.795 kb on - strand at 95.826 kb on + strand at 95.827 kb on - strand at 95.830 kb on + strand at 95.830 kb on + strand at 95.830 kb on + strand at 95.907 kb on + strand at 95.907 kb on + strand at 95.908 kb on - strand at 95.908 kb on - strand at 95.908 kb on - strand at 95.908 kb on - strand at 95.918 kb on - strand at 95.934 kb on + strand at 95.940 kb on + strand at 95.940 kb on + strand at 95.940 kb on + strand at 95.940 kb on + strand at 95.941 kb on - strand at 95.941 kb on - strand at 95.942 kb on + strand at 95.942 kb on + strand at 95.942 kb on + strand at 95.942 kb on + strand at 95.943 kb on - strand at 95.943 kb on - strand at 95.943 kb on - strand at 95.943 kb on - strand at 95.943 kb on - strand at 95.952 kb on - strand at 95.985 kb on - strand at 95.992 kb on - strand at 96.063 kb on + strand at 96.120 kb on - strand, within IAI47_19355 at 96.131 kb on + strand, within IAI47_19355 at 96.188 kb on + strand, within IAI47_19355 at 96.188 kb on + strand, within IAI47_19355 at 96.189 kb on - strand, within IAI47_19355 at 96.221 kb on + strand, within IAI47_19355 at 96.222 kb on - strand, within IAI47_19355 at 96.222 kb on - strand, within IAI47_19355 at 96.222 kb on - strand, within IAI47_19355 at 96.245 kb on - strand, within IAI47_19355 at 96.303 kb on + strand, within IAI47_19355 at 96.304 kb on - strand, within IAI47_19355 at 96.347 kb on - strand, within IAI47_19355 at 96.358 kb on + strand, within IAI47_19355 at 96.358 kb on + strand, within IAI47_19355 at 96.366 kb on - strand, within IAI47_19355 at 96.392 kb on + strand, within IAI47_19355 at 96.501 kb on + strand, within IAI47_19355 at 96.517 kb on + strand, within IAI47_19355 at 96.518 kb on - strand, within IAI47_19355 at 96.640 kb on + strand, within IAI47_19355 at 96.666 kb on + strand at 96.669 kb on - strand at 96.693 kb on + strand at 96.693 kb on + strand at 96.693 kb on + strand at 96.693 kb on + strand at 96.694 kb on - strand at 96.694 kb on - strand at 96.697 kb on + strand at 96.697 kb on + strand at 96.697 kb on + strand at 96.697 kb on + strand at 96.698 kb on - strand at 96.698 kb on - strand at 96.698 kb on - strand at 96.698 kb on - strand at 96.760 kb on + strand at 96.822 kb on + strand at 96.822 kb on + strand at 96.823 kb on - strand at 96.891 kb on - strand, within IAI47_19360 at 96.974 kb on - strand, within IAI47_19360 at 96.983 kb on + strand, within IAI47_19360 at 96.983 kb on + strand, within IAI47_19360 at 96.984 kb on - strand, within IAI47_19360 at 96.984 kb on - strand, within IAI47_19360 at 96.997 kb on + strand, within IAI47_19360 at 96.998 kb on - strand, within IAI47_19360 at 97.137 kb on + strand, within IAI47_19360 at 97.138 kb on - strand, within IAI47_19360 at 97.177 kb on + strand, within IAI47_19360 at 97.177 kb on + strand, within IAI47_19360 at 97.177 kb on + strand, within IAI47_19360 at 97.178 kb on - strand, within IAI47_19360 at 97.180 kb on + strand, within IAI47_19360 at 97.180 kb on + strand, within IAI47_19360 at 97.181 kb on - strand, within IAI47_19360 at 97.210 kb on - strand, within IAI47_19360 at 97.210 kb on - strand, within IAI47_19360 at 97.384 kb on + strand, within IAI47_19360 at 97.385 kb on - strand, within IAI47_19360 at 97.412 kb on + strand, within IAI47_19360 at 97.412 kb on + strand, within IAI47_19360 at 97.412 kb on + strand, within IAI47_19360 at 97.413 kb on - strand, within IAI47_19360 at 97.577 kb on + strand, within IAI47_19360 at 97.577 kb on + strand, within IAI47_19360 at 97.578 kb on - strand, within IAI47_19360 at 97.620 kb on + strand, within IAI47_19360 at 97.620 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.636 kb on + strand, within IAI47_19360 at 97.637 kb on - strand, within IAI47_19360 at 97.638 kb on + strand, within IAI47_19360 at 97.638 kb on + strand, within IAI47_19360 at 97.639 kb on - strand, within IAI47_19360 at 97.680 kb on + strand, within IAI47_19360 at 97.681 kb on - strand, within IAI47_19360 at 97.712 kb on - strand, within IAI47_19360 at 97.712 kb on - strand, within IAI47_19360 at 97.712 kb on - strand, within IAI47_19360 at 97.714 kb on + strand, within IAI47_19360 at 97.715 kb on - strand, within IAI47_19360 at 97.715 kb on - strand, within IAI47_19360
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 remove 94,999 + IAI47_19345 0.83 -0.2 94,999 + IAI47_19345 0.83 +1.1 94,999 + IAI47_19345 0.83 +0.2 94,999 + IAI47_19345 0.83 +0.3 94,999 + IAI47_19345 0.83 +1.5 95,000 - IAI47_19345 0.83 -0.2 95,000 - IAI47_19345 0.83 +0.2 95,000 - IAI47_19345 0.83 +0.6 95,001 + IAI47_19345 0.83 +1.8 95,001 + IAI47_19345 0.83 +1.1 95,001 + IAI47_19345 0.83 -1.1 95,001 + IAI47_19345 0.83 -1.8 95,001 + IAI47_19345 0.83 +1.2 95,001 + IAI47_19345 0.83 +0.9 95,002 - IAI47_19345 0.83 -2.0 95,002 - IAI47_19345 0.83 +0.3 95,011 + IAI47_19345 0.84 +0.8 95,011 + IAI47_19345 0.84 +0.3 95,011 + IAI47_19345 0.84 +0.8 95,012 - IAI47_19345 0.84 +0.7 95,012 - IAI47_19345 0.84 +0.3 95,012 - IAI47_19345 0.84 +1.1 95,041 + IAI47_19345 0.86 -0.3 95,041 + IAI47_19345 0.86 +0.2 95,042 - IAI47_19345 0.86 +1.8 95,042 - IAI47_19345 0.86 -1.4 95,059 + IAI47_19345 0.87 -0.4 95,059 + IAI47_19345 0.87 +0.7 95,059 + IAI47_19345 0.87 +2.1 95,160 + +0.1 95,160 + +2.1 95,160 + +0.0 95,161 - -0.5 95,225 + -1.5 95,225 + -0.0 95,225 + +1.7 95,225 + +0.8 95,225 + +0.6 95,225 + -3.1 95,225 + -0.4 95,225 + +0.4 95,226 - +1.8 95,258 - -0.2 95,293 + +0.9 95,293 + -0.5 95,293 + +1.2 95,293 + +2.4 95,294 - +0.2 95,294 - +1.3 95,294 - +1.7 95,294 - +0.5 95,294 - +2.5 95,370 - IAI47_19350 0.18 +1.5 95,370 - IAI47_19350 0.18 -1.2 95,383 + IAI47_19350 0.21 -0.8 95,384 - IAI47_19350 0.21 +0.7 95,384 - IAI47_19350 0.21 +2.6 95,384 - IAI47_19350 0.21 +0.7 95,432 + IAI47_19350 0.33 -0.2 95,433 - IAI47_19350 0.33 +0.3 95,481 - IAI47_19350 0.44 -0.1 95,544 - IAI47_19350 0.59 +1.9 95,552 + IAI47_19350 0.61 -0.2 95,579 + IAI47_19350 0.67 +2.2 95,579 + IAI47_19350 0.67 +0.6 95,579 + IAI47_19350 0.67 -1.7 95,580 - IAI47_19350 0.67 -1.4 95,580 - IAI47_19350 0.67 -1.2 95,684 + +1.3 95,684 + +1.6 95,684 + -1.8 95,685 - +0.2 95,685 - -2.1 95,685 - +1.9 95,687 + -0.5 95,688 - +0.1 95,688 - -0.0 95,688 - -0.2 95,711 + +0.0 95,712 - -0.4 95,720 + -0.9 95,720 + +1.2 95,720 + +1.6 95,720 + +0.9 95,721 - +1.6 95,721 - +0.1 95,721 - -1.8 95,732 + +0.7 95,770 + -0.4 95,770 + -0.5 95,770 + +0.3 95,772 + +2.3 95,772 + -0.3 95,773 - +0.8 95,773 - -0.1 95,794 + +1.1 95,795 - -1.9 95,826 + +2.9 95,827 - -0.0 95,830 + -0.8 95,830 + +0.7 95,830 + +1.0 95,907 + -0.5 95,907 + +1.0 95,908 - -0.3 95,908 - +0.9 95,908 - -1.5 95,908 - -0.2 95,918 - +0.1 95,934 + -0.5 95,940 + +0.8 95,940 + +0.3 95,940 + -0.5 95,940 + -0.1 95,941 - -0.5 95,941 - -0.5 95,942 + -0.5 95,942 + -1.8 95,942 + +0.8 95,942 + +2.5 95,943 - -0.8 95,943 - +0.1 95,943 - -0.3 95,943 - -0.9 95,943 - -0.2 95,952 - +1.1 95,985 - -0.4 95,992 - +1.1 96,063 + +1.4 96,120 - IAI47_19355 0.17 -0.7 96,131 + IAI47_19355 0.18 -0.6 96,188 + IAI47_19355 0.26 -1.2 96,188 + IAI47_19355 0.26 +0.8 96,189 - IAI47_19355 0.26 +0.1 96,221 + IAI47_19355 0.30 +2.2 96,222 - IAI47_19355 0.30 +0.5 96,222 - IAI47_19355 0.30 -2.2 96,222 - IAI47_19355 0.30 -1.7 96,245 - IAI47_19355 0.33 -1.8 96,303 + IAI47_19355 0.41 +0.8 96,304 - IAI47_19355 0.41 -0.7 96,347 - IAI47_19355 0.47 -1.7 96,358 + IAI47_19355 0.49 +0.1 96,358 + IAI47_19355 0.49 +1.3 96,366 - IAI47_19355 0.50 -1.0 96,392 + IAI47_19355 0.53 -1.0 96,501 + IAI47_19355 0.68 +0.9 96,517 + IAI47_19355 0.70 +0.1 96,518 - IAI47_19355 0.70 -0.7 96,640 + IAI47_19355 0.87 -1.3 96,666 + -0.1 96,669 - +0.6 96,693 + +0.8 96,693 + +0.1 96,693 + -0.8 96,693 + +0.2 96,694 - +0.2 96,694 - -1.4 96,697 + -0.9 96,697 + +1.8 96,697 + +0.0 96,697 + +1.0 96,698 - -0.7 96,698 - -1.3 96,698 - +0.2 96,698 - -0.1 96,760 + -0.5 96,822 + +1.5 96,822 + -0.6 96,823 - -0.4 96,891 - IAI47_19360 0.11 -1.0 96,974 - IAI47_19360 0.17 +0.1 96,983 + IAI47_19360 0.18 -1.0 96,983 + IAI47_19360 0.18 -0.6 96,984 - IAI47_19360 0.18 -0.2 96,984 - IAI47_19360 0.18 -0.4 96,997 + IAI47_19360 0.19 -0.7 96,998 - IAI47_19360 0.19 +0.5 97,137 + IAI47_19360 0.30 +0.6 97,138 - IAI47_19360 0.30 +0.6 97,177 + IAI47_19360 0.33 -0.0 97,177 + IAI47_19360 0.33 +1.2 97,177 + IAI47_19360 0.33 +1.0 97,178 - IAI47_19360 0.33 +0.5 97,180 + IAI47_19360 0.33 +0.8 97,180 + IAI47_19360 0.33 -1.6 97,181 - IAI47_19360 0.33 +0.6 97,210 - IAI47_19360 0.36 +1.3 97,210 - IAI47_19360 0.36 -0.1 97,384 + IAI47_19360 0.49 -0.8 97,385 - IAI47_19360 0.49 -0.2 97,412 + IAI47_19360 0.51 -0.8 97,412 + IAI47_19360 0.51 -0.6 97,412 + IAI47_19360 0.51 +0.6 97,413 - IAI47_19360 0.51 -0.0 97,577 + IAI47_19360 0.64 +1.4 97,577 + IAI47_19360 0.64 +0.3 97,578 - IAI47_19360 0.64 -0.2 97,620 + IAI47_19360 0.67 +0.8 97,620 + IAI47_19360 0.67 +0.6 97,636 + IAI47_19360 0.68 -0.2 97,636 + IAI47_19360 0.68 -1.6 97,636 + IAI47_19360 0.68 -0.1 97,636 + IAI47_19360 0.68 +0.2 97,637 - IAI47_19360 0.68 -0.6 97,638 + IAI47_19360 0.68 +0.9 97,638 + IAI47_19360 0.68 -0.4 97,639 - IAI47_19360 0.68 +1.2 97,680 + IAI47_19360 0.72 +0.1 97,681 - IAI47_19360 0.72 -2.3 97,712 - IAI47_19360 0.74 -0.3 97,712 - IAI47_19360 0.74 +0.3 97,712 - IAI47_19360 0.74 -0.2 97,714 + IAI47_19360 0.74 +1.3 97,715 - IAI47_19360 0.74 -0.7 97,715 - IAI47_19360 0.74 -0.7
Or see this region's nucleotide sequence