Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04370

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04350 and PGA1_c04360 overlap by 4 nucleotidesPGA1_c04360 and PGA1_c04370 overlap by 4 nucleotidesPGA1_c04370 and PGA1_c04380 are separated by 80 nucleotides PGA1_c04350: PGA1_c04350 - putative glycosyltransferase protein, at 419,898 to 421,040 _c04350 PGA1_c04360: PGA1_c04360 - putative phosphoglycerate mutase family protein, at 421,037 to 421,627 _c04360 PGA1_c04370: PGA1_c04370 - putative glycosyltransferase protein, at 421,624 to 422,658 _c04370 PGA1_c04380: PGA1_c04380 - putative colanic acid biosynthesis glycosyltransferase WcaL, at 422,739 to 423,998 _c04380 Position (kb) 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.678 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.719 kb on - strand, within PGA1_c04350at 420.746 kb on - strand, within PGA1_c04350at 420.775 kb on - strand, within PGA1_c04350at 420.775 kb on - strand, within PGA1_c04350at 420.780 kb on - strand, within PGA1_c04350at 420.780 kb on - strand, within PGA1_c04350at 420.782 kb on + strand, within PGA1_c04350at 420.804 kb on + strand, within PGA1_c04350at 420.812 kb on - strand, within PGA1_c04350at 420.895 kb on - strand, within PGA1_c04350at 420.902 kb on + strand, within PGA1_c04350at 420.910 kb on - strand, within PGA1_c04350at 420.910 kb on - strand, within PGA1_c04350at 420.910 kb on - strand, within PGA1_c04350at 420.922 kb on - strand, within PGA1_c04350at 420.940 kb on - strandat 420.977 kb on + strandat 420.990 kb on + strandat 420.993 kb on + strandat 420.998 kb on + strandat 420.998 kb on + strandat 421.003 kb on + strandat 421.144 kb on + strand, within PGA1_c04360at 421.215 kb on + strand, within PGA1_c04360at 421.243 kb on + strand, within PGA1_c04360at 421.297 kb on - strand, within PGA1_c04360at 421.313 kb on + strand, within PGA1_c04360at 421.321 kb on - strand, within PGA1_c04360at 421.355 kb on - strand, within PGA1_c04360at 421.355 kb on - strand, within PGA1_c04360at 421.362 kb on - strand, within PGA1_c04360at 421.372 kb on + strand, within PGA1_c04360at 421.377 kb on - strand, within PGA1_c04360at 421.377 kb on - strand, within PGA1_c04360at 421.380 kb on - strand, within PGA1_c04360at 421.391 kb on - strand, within PGA1_c04360at 421.468 kb on + strand, within PGA1_c04360at 421.476 kb on - strand, within PGA1_c04360at 421.480 kb on - strand, within PGA1_c04360at 421.503 kb on + strand, within PGA1_c04360at 421.534 kb on - strand, within PGA1_c04360at 421.536 kb on + strand, within PGA1_c04360at 421.591 kb on - strandat 421.604 kb on + strandat 421.645 kb on + strandat 421.690 kb on + strandat 421.726 kb on - strandat 421.748 kb on - strand, within PGA1_c04370at 421.808 kb on - strand, within PGA1_c04370at 421.819 kb on - strand, within PGA1_c04370at 421.828 kb on + strand, within PGA1_c04370at 421.838 kb on + strand, within PGA1_c04370at 421.846 kb on - strand, within PGA1_c04370at 421.848 kb on + strand, within PGA1_c04370at 421.856 kb on - strand, within PGA1_c04370at 421.936 kb on + strand, within PGA1_c04370at 422.026 kb on + strand, within PGA1_c04370at 422.039 kb on - strand, within PGA1_c04370at 422.044 kb on - strand, within PGA1_c04370at 422.050 kb on - strand, within PGA1_c04370at 422.084 kb on + strand, within PGA1_c04370at 422.141 kb on + strand, within PGA1_c04370at 422.141 kb on + strand, within PGA1_c04370at 422.146 kb on + strand, within PGA1_c04370at 422.169 kb on - strand, within PGA1_c04370at 422.171 kb on - strand, within PGA1_c04370at 422.272 kb on + strand, within PGA1_c04370at 422.280 kb on - strand, within PGA1_c04370at 422.280 kb on - strand, within PGA1_c04370at 422.302 kb on + strand, within PGA1_c04370at 422.396 kb on - strand, within PGA1_c04370at 422.537 kb on + strand, within PGA1_c04370at 422.545 kb on - strand, within PGA1_c04370at 422.619 kb on + strandat 422.647 kb on - strandat 422.647 kb on - strandat 422.669 kb on + strandat 422.675 kb on - strandat 422.682 kb on - strandat 422.712 kb on + strandat 422.735 kb on + strandat 422.743 kb on - strandat 422.828 kb on - strandat 422.852 kb on + strandat 422.878 kb on - strand, within PGA1_c04380at 422.879 kb on - strand, within PGA1_c04380at 422.892 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.918 kb on + strand, within PGA1_c04380at 422.926 kb on - strand, within PGA1_c04380at 422.926 kb on - strand, within PGA1_c04380at 422.926 kb on - strand, within PGA1_c04380at 422.943 kb on + strand, within PGA1_c04380at 422.961 kb on - strand, within PGA1_c04380at 422.962 kb on + strand, within PGA1_c04380at 422.983 kb on + strand, within PGA1_c04380at 423.041 kb on + strand, within PGA1_c04380at 423.049 kb on - strand, within PGA1_c04380at 423.065 kb on + strand, within PGA1_c04380at 423.073 kb on - strand, within PGA1_c04380at 423.073 kb on - strand, within PGA1_c04380at 423.238 kb on + strand, within PGA1_c04380at 423.293 kb on - strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.350 kb on + strand, within PGA1_c04380at 423.358 kb on - strand, within PGA1_c04380at 423.394 kb on + strand, within PGA1_c04380at 423.394 kb on + strand, within PGA1_c04380at 423.394 kb on + strand, within PGA1_c04380at 423.397 kb on - strand, within PGA1_c04380at 423.451 kb on + strand, within PGA1_c04380at 423.499 kb on + strand, within PGA1_c04380at 423.499 kb on + strand, within PGA1_c04380at 423.499 kb on + strand, within PGA1_c04380at 423.529 kb on + strand, within PGA1_c04380at 423.534 kb on + strand, within PGA1_c04380at 423.537 kb on - strand, within PGA1_c04380at 423.585 kb on - strand, within PGA1_c04380at 423.585 kb on - strand, within PGA1_c04380at 423.645 kb on - strand, within PGA1_c04380at 423.645 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380at 423.650 kb on - strand, within PGA1_c04380

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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420,665 + PGA1_c04350 0.67 -1.6
420,665 + PGA1_c04350 0.67 +0.3
420,665 + PGA1_c04350 0.67 -2.7
420,665 + PGA1_c04350 0.67 +0.7
420,678 + PGA1_c04350 0.68 -2.2
420,701 + PGA1_c04350 0.70 -1.4
420,701 + PGA1_c04350 0.70 +0.7
420,701 + PGA1_c04350 0.70 -0.7
420,719 - PGA1_c04350 0.72 +0.9
420,746 - PGA1_c04350 0.74 -1.4
420,775 - PGA1_c04350 0.77 +0.8
420,775 - PGA1_c04350 0.77 +0.5
420,780 - PGA1_c04350 0.77 -0.6
420,780 - PGA1_c04350 0.77 -0.5
420,782 + PGA1_c04350 0.77 +0.6
420,804 + PGA1_c04350 0.79 -0.5
420,812 - PGA1_c04350 0.80 -0.4
420,895 - PGA1_c04350 0.87 -2.6
420,902 + PGA1_c04350 0.88 -1.0
420,910 - PGA1_c04350 0.89 +0.6
420,910 - PGA1_c04350 0.89 -1.1
420,910 - PGA1_c04350 0.89 +0.4
420,922 - PGA1_c04350 0.90 +0.2
420,940 - -0.1
420,977 + +0.2
420,990 + +0.6
420,993 + +0.3
420,998 + +0.3
420,998 + -0.5
421,003 + -0.4
421,144 + PGA1_c04360 0.18 -0.4
421,215 + PGA1_c04360 0.30 -0.2
421,243 + PGA1_c04360 0.35 -1.4
421,297 - PGA1_c04360 0.44 -1.1
421,313 + PGA1_c04360 0.47 +0.6
421,321 - PGA1_c04360 0.48 +0.0
421,355 - PGA1_c04360 0.54 -0.9
421,355 - PGA1_c04360 0.54 +1.1
421,362 - PGA1_c04360 0.55 -1.3
421,372 + PGA1_c04360 0.57 +0.3
421,377 - PGA1_c04360 0.58 +0.3
421,377 - PGA1_c04360 0.58 -1.0
421,380 - PGA1_c04360 0.58 +0.6
421,391 - PGA1_c04360 0.60 -0.6
421,468 + PGA1_c04360 0.73 -0.1
421,476 - PGA1_c04360 0.74 -0.3
421,480 - PGA1_c04360 0.75 +0.9
421,503 + PGA1_c04360 0.79 -0.4
421,534 - PGA1_c04360 0.84 +1.0
421,536 + PGA1_c04360 0.84 -1.8
421,591 - +1.2
421,604 + +0.2
421,645 + -1.6
421,690 + -0.1
421,726 - -0.0
421,748 - PGA1_c04370 0.12 +1.8
421,808 - PGA1_c04370 0.18 -1.6
421,819 - PGA1_c04370 0.19 +0.1
421,828 + PGA1_c04370 0.20 -0.6
421,838 + PGA1_c04370 0.21 -0.1
421,846 - PGA1_c04370 0.21 -0.0
421,848 + PGA1_c04370 0.22 +0.3
421,856 - PGA1_c04370 0.22 +0.5
421,936 + PGA1_c04370 0.30 -0.8
422,026 + PGA1_c04370 0.39 -1.4
422,039 - PGA1_c04370 0.40 -0.0
422,044 - PGA1_c04370 0.41 -2.0
422,050 - PGA1_c04370 0.41 -0.1
422,084 + PGA1_c04370 0.44 -0.5
422,141 + PGA1_c04370 0.50 -0.0
422,141 + PGA1_c04370 0.50 -0.9
422,146 + PGA1_c04370 0.50 -0.2
422,169 - PGA1_c04370 0.53 -0.8
422,171 - PGA1_c04370 0.53 -1.9
422,272 + PGA1_c04370 0.63 +0.9
422,280 - PGA1_c04370 0.63 +0.8
422,280 - PGA1_c04370 0.63 +0.1
422,302 + PGA1_c04370 0.66 -1.1
422,396 - PGA1_c04370 0.75 -0.3
422,537 + PGA1_c04370 0.88 -0.2
422,545 - PGA1_c04370 0.89 -0.3
422,619 + -0.4
422,647 - -1.0
422,647 - -0.4
422,669 + +0.2
422,675 - +0.2
422,682 - -0.2
422,712 + -0.6
422,735 + -0.2
422,743 - -0.1
422,828 - -0.5
422,852 + -1.9
422,878 - PGA1_c04380 0.11 +0.5
422,879 - PGA1_c04380 0.11 -0.4
422,892 + PGA1_c04380 0.12 +0.1
422,918 + PGA1_c04380 0.14 -0.8
422,918 + PGA1_c04380 0.14 +0.3
422,918 + PGA1_c04380 0.14 +0.6
422,918 + PGA1_c04380 0.14 +0.9
422,918 + PGA1_c04380 0.14 +0.1
422,918 + PGA1_c04380 0.14 +0.5
422,918 + PGA1_c04380 0.14 -1.7
422,918 + PGA1_c04380 0.14 +0.1
422,918 + PGA1_c04380 0.14 -0.7
422,926 - PGA1_c04380 0.15 +1.0
422,926 - PGA1_c04380 0.15 -0.5
422,926 - PGA1_c04380 0.15 -0.4
422,943 + PGA1_c04380 0.16 -0.4
422,961 - PGA1_c04380 0.18 +0.2
422,962 + PGA1_c04380 0.18 -0.5
422,983 + PGA1_c04380 0.19 +1.2
423,041 + PGA1_c04380 0.24 -0.1
423,049 - PGA1_c04380 0.25 +1.3
423,065 + PGA1_c04380 0.26 -2.1
423,073 - PGA1_c04380 0.27 +1.1
423,073 - PGA1_c04380 0.27 +0.6
423,238 + PGA1_c04380 0.40 +0.1
423,293 - PGA1_c04380 0.44 -2.4
423,350 + PGA1_c04380 0.48 -1.1
423,350 + PGA1_c04380 0.48 -0.4
423,350 + PGA1_c04380 0.48 -0.0
423,350 + PGA1_c04380 0.48 +1.1
423,358 - PGA1_c04380 0.49 -0.1
423,394 + PGA1_c04380 0.52 +0.2
423,394 + PGA1_c04380 0.52 +1.1
423,394 + PGA1_c04380 0.52 -1.2
423,397 - PGA1_c04380 0.52 -0.6
423,451 + PGA1_c04380 0.57 -0.4
423,499 + PGA1_c04380 0.60 -0.4
423,499 + PGA1_c04380 0.60 -0.8
423,499 + PGA1_c04380 0.60 +1.0
423,529 + PGA1_c04380 0.63 -0.7
423,534 + PGA1_c04380 0.63 -1.3
423,537 - PGA1_c04380 0.63 -1.2
423,585 - PGA1_c04380 0.67 -0.2
423,585 - PGA1_c04380 0.67 -1.1
423,645 - PGA1_c04380 0.72 -0.1
423,645 - PGA1_c04380 0.72 -1.0
423,650 - PGA1_c04380 0.72 +0.6
423,650 - PGA1_c04380 0.72 -0.5
423,650 - PGA1_c04380 0.72 +0.0
423,650 - PGA1_c04380 0.72 -0.4

Or see this region's nucleotide sequence