Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01700 and PGA1_262p01710 are separated by 15 nucleotides PGA1_262p01710 and PGA1_262p01720 are separated by 12 nucleotides PGA1_262p01720 and PGA1_262p01730 overlap by 4 nucleotides
PGA1_262p01700: PGA1_262p01700 - putative ABC transporter, solute-binding protein, at 186,439 to 187,989
_262p01700
PGA1_262p01710: PGA1_262p01710 - putative glutathione transport system permease protein, at 188,005 to 188,943
_262p01710
PGA1_262p01720: PGA1_262p01720 - putative glutathione transport system permease protein, at 188,956 to 189,834
_262p01720
PGA1_262p01730: PGA1_262p01730 - putative glutathione import ATP-binding protein, at 189,831 to 190,808
_262p01730
Position (kb) 188
189 Strain fitness (log2 ratio) -2
-1
0
1 at 187.195 kb on - strand, within PGA1_262p01700 at 187.534 kb on - strand, within PGA1_262p01700 at 187.584 kb on + strand, within PGA1_262p01700 at 187.659 kb on - strand, within PGA1_262p01700 at 187.705 kb on + strand, within PGA1_262p01700 at 187.850 kb on - strand at 187.850 kb on - strand at 187.984 kb on + strand at 188.117 kb on + strand, within PGA1_262p01710 at 188.176 kb on + strand, within PGA1_262p01710 at 188.322 kb on + strand, within PGA1_262p01710 at 188.405 kb on + strand, within PGA1_262p01710 at 188.449 kb on + strand, within PGA1_262p01710 at 188.457 kb on - strand, within PGA1_262p01710 at 188.527 kb on + strand, within PGA1_262p01710 at 188.641 kb on + strand, within PGA1_262p01710 at 188.714 kb on - strand, within PGA1_262p01710 at 188.726 kb on + strand, within PGA1_262p01710 at 188.980 kb on + strand at 188.988 kb on - strand at 189.046 kb on + strand, within PGA1_262p01720 at 189.046 kb on + strand, within PGA1_262p01720 at 189.095 kb on + strand, within PGA1_262p01720 at 189.173 kb on - strand, within PGA1_262p01720 at 189.361 kb on + strand, within PGA1_262p01720 at 189.393 kb on + strand, within PGA1_262p01720 at 189.474 kb on + strand, within PGA1_262p01720 at 189.474 kb on + strand, within PGA1_262p01720 at 189.476 kb on + strand, within PGA1_262p01720 at 189.476 kb on + strand, within PGA1_262p01720 at 189.476 kb on + strand, within PGA1_262p01720 at 189.482 kb on - strand, within PGA1_262p01720 at 189.482 kb on - strand, within PGA1_262p01720 at 189.494 kb on - strand, within PGA1_262p01720 at 189.540 kb on + strand, within PGA1_262p01720 at 189.540 kb on + strand, within PGA1_262p01720 at 189.586 kb on + strand, within PGA1_262p01720 at 189.647 kb on + strand, within PGA1_262p01720 at 189.685 kb on - strand, within PGA1_262p01720 at 189.695 kb on - strand, within PGA1_262p01720 at 189.698 kb on + strand, within PGA1_262p01720 at 189.825 kb on + strand at 189.835 kb on + strand at 189.893 kb on + strand at 189.899 kb on - strand at 189.899 kb on - strand at 189.940 kb on - strand, within PGA1_262p01730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 187,195 - PGA1_262p01700 0.49 -0.8 187,534 - PGA1_262p01700 0.71 -2.0 187,584 + PGA1_262p01700 0.74 +0.8 187,659 - PGA1_262p01700 0.79 +1.7 187,705 + PGA1_262p01700 0.82 -0.3 187,850 - +1.6 187,850 - -0.7 187,984 + -0.7 188,117 + PGA1_262p01710 0.12 +0.0 188,176 + PGA1_262p01710 0.18 -1.2 188,322 + PGA1_262p01710 0.34 +0.3 188,405 + PGA1_262p01710 0.43 +0.2 188,449 + PGA1_262p01710 0.47 +0.5 188,457 - PGA1_262p01710 0.48 +0.5 188,527 + PGA1_262p01710 0.56 +1.0 188,641 + PGA1_262p01710 0.68 +1.4 188,714 - PGA1_262p01710 0.76 +1.1 188,726 + PGA1_262p01710 0.77 +0.6 188,980 + +1.1 188,988 - +0.3 189,046 + PGA1_262p01720 0.10 +1.0 189,046 + PGA1_262p01720 0.10 -0.6 189,095 + PGA1_262p01720 0.16 -0.6 189,173 - PGA1_262p01720 0.25 +1.4 189,361 + PGA1_262p01720 0.46 -0.2 189,393 + PGA1_262p01720 0.50 -0.6 189,474 + PGA1_262p01720 0.59 +0.1 189,474 + PGA1_262p01720 0.59 +0.4 189,476 + PGA1_262p01720 0.59 +0.2 189,476 + PGA1_262p01720 0.59 +0.8 189,476 + PGA1_262p01720 0.59 -0.3 189,482 - PGA1_262p01720 0.60 +0.4 189,482 - PGA1_262p01720 0.60 +0.0 189,494 - PGA1_262p01720 0.61 +0.1 189,540 + PGA1_262p01720 0.66 -1.4 189,540 + PGA1_262p01720 0.66 -0.4 189,586 + PGA1_262p01720 0.72 -0.5 189,647 + PGA1_262p01720 0.79 -0.2 189,685 - PGA1_262p01720 0.83 +0.5 189,695 - PGA1_262p01720 0.84 +0.1 189,698 + PGA1_262p01720 0.84 +0.2 189,825 + -0.8 189,835 + -1.3 189,893 + +0.6 189,899 - +0.9 189,899 - -0.4 189,940 - PGA1_262p01730 0.11 +1.3
Or see this region's nucleotide sequence