Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24750 and PGA1_c24760 are separated by 609 nucleotides PGA1_c24760 and PGA1_c24770 are separated by 99 nucleotides PGA1_c24770 and PGA1_c24780 are separated by 242 nucleotides
PGA1_c24750: PGA1_c24750 - uncharacterized protein, YfiH family, at 2,580,478 to 2,581,245
_c24750
PGA1_c24760: PGA1_c24760 - hypothetical protein, at 2,581,855 to 2,582,631
_c24760
PGA1_c24770: PGA1_c24770 - putative leucine-responsive regulatory protein, at 2,582,731 to 2,583,231
_c24770
PGA1_c24780: PGA1_c24780 - thioredoxin reductase TrxB, at 2,583,474 to 2,584,415
_c24780
Position (kb)
2581
2582
2583 Strain fitness (log2 ratio)
-2
-1
0
1 at 2580.864 kb on - strand, within PGA1_c24750 at 2580.883 kb on - strand, within PGA1_c24750 at 2580.980 kb on + strand, within PGA1_c24750 at 2581.060 kb on + strand, within PGA1_c24750 at 2581.088 kb on + strand, within PGA1_c24750 at 2581.096 kb on - strand, within PGA1_c24750 at 2581.131 kb on + strand, within PGA1_c24750 at 2581.139 kb on - strand, within PGA1_c24750 at 2581.264 kb on - strand at 2581.286 kb on + strand at 2581.294 kb on - strand at 2581.345 kb on - strand at 2581.412 kb on + strand at 2581.421 kb on + strand at 2581.426 kb on + strand at 2581.502 kb on + strand at 2581.505 kb on - strand at 2581.517 kb on + strand at 2581.525 kb on - strand at 2581.597 kb on + strand at 2581.661 kb on + strand at 2581.697 kb on - strand at 2581.764 kb on + strand at 2581.811 kb on + strand at 2581.833 kb on - strand at 2581.852 kb on + strand at 2581.935 kb on + strand, within PGA1_c24760 at 2581.935 kb on + strand, within PGA1_c24760 at 2581.981 kb on + strand, within PGA1_c24760 at 2581.989 kb on - strand, within PGA1_c24760 at 2582.084 kb on - strand, within PGA1_c24760 at 2582.138 kb on - strand, within PGA1_c24760 at 2582.163 kb on + strand, within PGA1_c24760 at 2582.181 kb on - strand, within PGA1_c24760 at 2582.227 kb on - strand, within PGA1_c24760 at 2582.242 kb on + strand, within PGA1_c24760 at 2582.250 kb on - strand, within PGA1_c24760 at 2582.312 kb on - strand, within PGA1_c24760 at 2582.355 kb on + strand, within PGA1_c24760 at 2582.363 kb on - strand, within PGA1_c24760 at 2582.429 kb on - strand, within PGA1_c24760 at 2582.483 kb on + strand, within PGA1_c24760 at 2582.503 kb on - strand, within PGA1_c24760 at 2582.503 kb on - strand, within PGA1_c24760 at 2582.520 kb on - strand, within PGA1_c24760 at 2582.548 kb on - strand, within PGA1_c24760 at 2582.625 kb on + strand at 2582.633 kb on - strand at 2582.633 kb on - strand at 2582.633 kb on - strand at 2582.639 kb on - strand at 2582.716 kb on + strand at 2582.729 kb on + strand at 2582.729 kb on + strand at 2582.732 kb on - strand at 2582.732 kb on - strand at 2582.737 kb on - strand at 2582.837 kb on - strand, within PGA1_c24770 at 2582.855 kb on - strand, within PGA1_c24770 at 2582.944 kb on - strand, within PGA1_c24770 at 2583.140 kb on + strand, within PGA1_c24770 at 2583.328 kb on + strand at 2583.328 kb on + strand at 2583.328 kb on + strand at 2583.328 kb on + strand at 2583.333 kb on + strand at 2583.336 kb on - strand at 2583.336 kb on - strand at 2583.361 kb on + strand at 2583.361 kb on + strand at 2583.361 kb on + strand at 2583.361 kb on + strand at 2583.361 kb on + strand at 2583.361 kb on + strand at 2583.361 kb on + strand at 2583.361 kb on + strand at 2583.361 kb on + strand at 2583.369 kb on - strand at 2583.369 kb on - strand at 2583.369 kb on - strand at 2583.369 kb on - strand at 2583.369 kb on - strand at 2583.369 kb on - strand at 2583.369 kb on - strand at 2583.369 kb on - strand at 2583.394 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 2,580,864 - PGA1_c24750 0.50 -0.2 2,580,883 - PGA1_c24750 0.53 -0.3 2,580,980 + PGA1_c24750 0.65 +0.2 2,581,060 + PGA1_c24750 0.76 -0.7 2,581,088 + PGA1_c24750 0.79 -0.5 2,581,096 - PGA1_c24750 0.80 -0.7 2,581,131 + PGA1_c24750 0.85 +0.3 2,581,139 - PGA1_c24750 0.86 -0.8 2,581,264 - -0.1 2,581,286 + -1.9 2,581,294 - -2.6 2,581,345 - -0.2 2,581,412 + +0.9 2,581,421 + +0.4 2,581,426 + -0.7 2,581,502 + -0.5 2,581,505 - +0.5 2,581,517 + +0.2 2,581,525 - +1.1 2,581,597 + +0.6 2,581,661 + -0.7 2,581,697 - -0.3 2,581,764 + +0.3 2,581,811 + -0.6 2,581,833 - +0.5 2,581,852 + +0.4 2,581,935 + PGA1_c24760 0.10 -0.3 2,581,935 + PGA1_c24760 0.10 +0.6 2,581,981 + PGA1_c24760 0.16 +0.4 2,581,989 - PGA1_c24760 0.17 -1.1 2,582,084 - PGA1_c24760 0.29 +0.1 2,582,138 - PGA1_c24760 0.36 -0.1 2,582,163 + PGA1_c24760 0.40 -0.3 2,582,181 - PGA1_c24760 0.42 +1.0 2,582,227 - PGA1_c24760 0.48 +0.3 2,582,242 + PGA1_c24760 0.50 +0.2 2,582,250 - PGA1_c24760 0.51 -1.5 2,582,312 - PGA1_c24760 0.59 +0.4 2,582,355 + PGA1_c24760 0.64 +0.4 2,582,363 - PGA1_c24760 0.65 +0.8 2,582,429 - PGA1_c24760 0.74 +1.7 2,582,483 + PGA1_c24760 0.81 +0.1 2,582,503 - PGA1_c24760 0.83 +0.4 2,582,503 - PGA1_c24760 0.83 -0.6 2,582,520 - PGA1_c24760 0.86 +0.7 2,582,548 - PGA1_c24760 0.89 -0.4 2,582,625 + -1.6 2,582,633 - -0.2 2,582,633 - +1.3 2,582,633 - +0.5 2,582,639 - -1.3 2,582,716 + +0.1 2,582,729 + -0.0 2,582,729 + -0.6 2,582,732 - +0.3 2,582,732 - -1.1 2,582,737 - -0.0 2,582,837 - PGA1_c24770 0.21 -0.6 2,582,855 - PGA1_c24770 0.25 -1.4 2,582,944 - PGA1_c24770 0.43 -1.2 2,583,140 + PGA1_c24770 0.82 -1.1 2,583,328 + -0.1 2,583,328 + -0.1 2,583,328 + -1.1 2,583,328 + -0.1 2,583,333 + +0.4 2,583,336 - +0.7 2,583,336 - -0.4 2,583,361 + -1.4 2,583,361 + -1.6 2,583,361 + -0.1 2,583,361 + +1.1 2,583,361 + +0.8 2,583,361 + -0.7 2,583,361 + +0.1 2,583,361 + -1.0 2,583,361 + +0.4 2,583,369 - +0.3 2,583,369 - -0.7 2,583,369 - +0.3 2,583,369 - +0.0 2,583,369 - +0.8 2,583,369 - -0.5 2,583,369 - -0.6 2,583,369 - +1.0 2,583,394 + +0.5
Or see this region's nucleotide sequence