Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20770

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c20760 and PGA1_c20770 are separated by 4 nucleotidesPGA1_c20770 and PGA1_c20780 are separated by 3 nucleotidesPGA1_c20780 and PGA1_c20790 are separated by 136 nucleotides PGA1_c20760: PGA1_c20760 - putative nitrite/sulfite reductase, at 2,152,444 to 2,154,108 _c20760 PGA1_c20770: PGA1_c20770 - phosphoadenosine phosphosulfate reductase CysH, at 2,154,113 to 2,154,892 _c20770 PGA1_c20780: PGA1_c20780 - Uncharacterized protein conserved in bacteria, at 2,154,896 to 2,155,294 _c20780 PGA1_c20790: PGA1_c20790 - ferredoxin--NADP reductase Fpr, at 2,155,431 to 2,156,306 _c20790 Position (kb) 2154 2155Strain fitness (log2 ratio) -1 0 1at 2153.641 kb on - strand, within PGA1_c20760at 2154.063 kb on + strandat 2154.152 kb on + strandat 2154.152 kb on + strandat 2154.605 kb on + strand, within PGA1_c20770at 2155.294 kb on + strandat 2155.380 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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2,153,641 - PGA1_c20760 0.72 +1.3
2,154,063 + -0.1
2,154,152 + +1.1
2,154,152 + -0.2
2,154,605 + PGA1_c20770 0.63 +0.0
2,155,294 + +0.1
2,155,380 + +0.3

Or see this region's nucleotide sequence