Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20760

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c20740 and PGA1_c20750 overlap by 1 nucleotidesPGA1_c20750 and PGA1_c20760 overlap by 8 nucleotidesPGA1_c20760 and PGA1_c20770 are separated by 4 nucleotidesPGA1_c20770 and PGA1_c20780 are separated by 3 nucleotides PGA1_c20740: PGA1_c20740 - uroporphyrinogen-III C-methyltransferase CobA, at 2,151,310 to 2,152,143 _c20740 PGA1_c20750: PGA1_c20750 - Protein of unknown function (DUF2849)., at 2,152,143 to 2,152,451 _c20750 PGA1_c20760: PGA1_c20760 - putative nitrite/sulfite reductase, at 2,152,444 to 2,154,108 _c20760 PGA1_c20770: PGA1_c20770 - phosphoadenosine phosphosulfate reductase CysH, at 2,154,113 to 2,154,892 _c20770 PGA1_c20780: PGA1_c20780 - Uncharacterized protein conserved in bacteria, at 2,154,896 to 2,155,294 _c20780 Position (kb) 2152 2153 2154 2155Strain fitness (log2 ratio) -2 -1 0 1 2at 2151.566 kb on + strand, within PGA1_c20740at 2151.566 kb on + strand, within PGA1_c20740at 2151.632 kb on + strand, within PGA1_c20740at 2151.699 kb on - strand, within PGA1_c20740at 2151.735 kb on + strand, within PGA1_c20740at 2151.777 kb on + strand, within PGA1_c20740at 2151.787 kb on - strand, within PGA1_c20740at 2151.787 kb on - strand, within PGA1_c20740at 2151.860 kb on - strand, within PGA1_c20740at 2151.860 kb on - strand, within PGA1_c20740at 2151.862 kb on + strand, within PGA1_c20740at 2151.870 kb on - strand, within PGA1_c20740at 2151.870 kb on - strand, within PGA1_c20740at 2151.870 kb on - strand, within PGA1_c20740at 2151.935 kb on - strand, within PGA1_c20740at 2152.093 kb on - strandat 2152.105 kb on + strandat 2152.574 kb on + strandat 2152.595 kb on + strandat 2152.634 kb on + strandat 2152.660 kb on - strand, within PGA1_c20760at 2152.797 kb on - strand, within PGA1_c20760at 2153.641 kb on - strand, within PGA1_c20760at 2154.063 kb on + strandat 2154.152 kb on + strandat 2154.152 kb on + strandat 2154.605 kb on + strand, within PGA1_c20770

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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2,151,566 + PGA1_c20740 0.31 -0.5
2,151,566 + PGA1_c20740 0.31 +0.7
2,151,632 + PGA1_c20740 0.39 -0.4
2,151,699 - PGA1_c20740 0.47 -0.3
2,151,735 + PGA1_c20740 0.51 -2.5
2,151,777 + PGA1_c20740 0.56 -0.2
2,151,787 - PGA1_c20740 0.57 -0.4
2,151,787 - PGA1_c20740 0.57 +0.3
2,151,860 - PGA1_c20740 0.66 -1.7
2,151,860 - PGA1_c20740 0.66 -0.1
2,151,862 + PGA1_c20740 0.66 +0.2
2,151,870 - PGA1_c20740 0.67 +0.3
2,151,870 - PGA1_c20740 0.67 +0.1
2,151,870 - PGA1_c20740 0.67 -0.5
2,151,935 - PGA1_c20740 0.75 -1.0
2,152,093 - +0.2
2,152,105 + -0.1
2,152,574 + +1.1
2,152,595 + -1.2
2,152,634 + +1.9
2,152,660 - PGA1_c20760 0.13 +0.6
2,152,797 - PGA1_c20760 0.21 +2.7
2,153,641 - PGA1_c20760 0.72 +1.3
2,154,063 + -0.1
2,154,152 + +1.1
2,154,152 + -0.2
2,154,605 + PGA1_c20770 0.63 +0.0

Or see this region's nucleotide sequence