Experiment: A22 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27860 and BWI76_RS27865 are separated by 53 nucleotides BWI76_RS27865 and BWI76_RS27870 overlap by 4 nucleotides BWI76_RS27870 and BWI76_RS27875 overlap by 11 nucleotides BWI76_RS27875 and BWI76_RS27880 are separated by 179 nucleotides
BWI76_RS27860: BWI76_RS27860 - D-serine dehydratase, at 5,778,735 to 5,780,063
_RS27860
BWI76_RS27865: BWI76_RS27865 - hypothetical protein, at 5,780,117 to 5,780,647
_RS27865
BWI76_RS27870: BWI76_RS27870 - membrane protein, at 5,780,644 to 5,781,006
_RS27870
BWI76_RS27875: BWI76_RS27875 - membrane protein, at 5,780,996 to 5,781,343
_RS27875
BWI76_RS27880: BWI76_RS27880 - 6-phospho-alpha-glucosidase, at 5,781,523 to 5,782,845
_RS27880
Position (kb) 5780
5781
5782 Strain fitness (log2 ratio) -1
0
1 at 5780.042 kb on + strand at 5780.143 kb on - strand at 5780.233 kb on + strand, within BWI76_RS27865 at 5780.289 kb on - strand, within BWI76_RS27865 at 5780.375 kb on - strand, within BWI76_RS27865 at 5780.375 kb on - strand, within BWI76_RS27865 at 5780.417 kb on + strand, within BWI76_RS27865 at 5780.600 kb on - strand at 5780.679 kb on + strand at 5780.693 kb on - strand, within BWI76_RS27870 at 5780.775 kb on + strand, within BWI76_RS27870 at 5780.917 kb on + strand, within BWI76_RS27870 at 5780.917 kb on + strand, within BWI76_RS27870 at 5780.925 kb on - strand, within BWI76_RS27870 at 5781.046 kb on + strand, within BWI76_RS27875 at 5781.091 kb on + strand, within BWI76_RS27875 at 5781.539 kb on - strand at 5781.613 kb on - strand at 5781.697 kb on + strand, within BWI76_RS27880 at 5782.010 kb on + strand, within BWI76_RS27880 at 5782.044 kb on + strand, within BWI76_RS27880 at 5782.052 kb on - strand, within BWI76_RS27880 at 5782.053 kb on - strand, within BWI76_RS27880 at 5782.105 kb on - strand, within BWI76_RS27880 at 5782.191 kb on + strand, within BWI76_RS27880 at 5782.262 kb on - strand, within BWI76_RS27880 at 5782.295 kb on - strand, within BWI76_RS27880 at 5782.295 kb on - strand, within BWI76_RS27880
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.1 mg/ml remove 5,780,042 + -0.8 5,780,143 - -0.4 5,780,233 + BWI76_RS27865 0.22 +0.2 5,780,289 - BWI76_RS27865 0.32 +0.3 5,780,375 - BWI76_RS27865 0.49 +0.4 5,780,375 - BWI76_RS27865 0.49 -1.0 5,780,417 + BWI76_RS27865 0.56 +0.1 5,780,600 - -0.5 5,780,679 + -0.7 5,780,693 - BWI76_RS27870 0.13 -0.2 5,780,775 + BWI76_RS27870 0.36 -0.2 5,780,917 + BWI76_RS27870 0.75 -0.1 5,780,917 + BWI76_RS27870 0.75 -0.5 5,780,925 - BWI76_RS27870 0.77 -0.7 5,781,046 + BWI76_RS27875 0.14 -1.1 5,781,091 + BWI76_RS27875 0.27 -0.3 5,781,539 - -0.2 5,781,613 - +0.1 5,781,697 + BWI76_RS27880 0.13 +0.1 5,782,010 + BWI76_RS27880 0.37 -0.3 5,782,044 + BWI76_RS27880 0.39 +1.0 5,782,052 - BWI76_RS27880 0.40 -0.0 5,782,053 - BWI76_RS27880 0.40 +1.6 5,782,105 - BWI76_RS27880 0.44 -0.5 5,782,191 + BWI76_RS27880 0.50 +0.1 5,782,262 - BWI76_RS27880 0.56 -1.7 5,782,295 - BWI76_RS27880 0.58 +0.4 5,782,295 - BWI76_RS27880 0.58 -0.1
Or see this region's nucleotide sequence