Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27875

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27860 and BWI76_RS27865 are separated by 53 nucleotidesBWI76_RS27865 and BWI76_RS27870 overlap by 4 nucleotidesBWI76_RS27870 and BWI76_RS27875 overlap by 11 nucleotidesBWI76_RS27875 and BWI76_RS27880 are separated by 179 nucleotides BWI76_RS27860: BWI76_RS27860 - D-serine dehydratase, at 5,778,735 to 5,780,063 _RS27860 BWI76_RS27865: BWI76_RS27865 - hypothetical protein, at 5,780,117 to 5,780,647 _RS27865 BWI76_RS27870: BWI76_RS27870 - membrane protein, at 5,780,644 to 5,781,006 _RS27870 BWI76_RS27875: BWI76_RS27875 - membrane protein, at 5,780,996 to 5,781,343 _RS27875 BWI76_RS27880: BWI76_RS27880 - 6-phospho-alpha-glucosidase, at 5,781,523 to 5,782,845 _RS27880 Position (kb) 5780 5781 5782Strain fitness (log2 ratio) -1 0 1at 5780.042 kb on + strandat 5780.143 kb on - strandat 5780.233 kb on + strand, within BWI76_RS27865at 5780.289 kb on - strand, within BWI76_RS27865at 5780.375 kb on - strand, within BWI76_RS27865at 5780.375 kb on - strand, within BWI76_RS27865at 5780.417 kb on + strand, within BWI76_RS27865at 5780.600 kb on - strandat 5780.679 kb on + strandat 5780.693 kb on - strand, within BWI76_RS27870at 5780.775 kb on + strand, within BWI76_RS27870at 5780.917 kb on + strand, within BWI76_RS27870at 5780.917 kb on + strand, within BWI76_RS27870at 5780.925 kb on - strand, within BWI76_RS27870at 5781.046 kb on + strand, within BWI76_RS27875at 5781.091 kb on + strand, within BWI76_RS27875at 5781.539 kb on - strandat 5781.613 kb on - strandat 5781.697 kb on + strand, within BWI76_RS27880at 5782.010 kb on + strand, within BWI76_RS27880at 5782.044 kb on + strand, within BWI76_RS27880at 5782.052 kb on - strand, within BWI76_RS27880at 5782.053 kb on - strand, within BWI76_RS27880at 5782.105 kb on - strand, within BWI76_RS27880at 5782.191 kb on + strand, within BWI76_RS27880at 5782.262 kb on - strand, within BWI76_RS27880at 5782.295 kb on - strand, within BWI76_RS27880at 5782.295 kb on - strand, within BWI76_RS27880

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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5,780,042 + -0.8
5,780,143 - -0.4
5,780,233 + BWI76_RS27865 0.22 +0.2
5,780,289 - BWI76_RS27865 0.32 +0.3
5,780,375 - BWI76_RS27865 0.49 +0.4
5,780,375 - BWI76_RS27865 0.49 -1.0
5,780,417 + BWI76_RS27865 0.56 +0.1
5,780,600 - -0.5
5,780,679 + -0.7
5,780,693 - BWI76_RS27870 0.13 -0.2
5,780,775 + BWI76_RS27870 0.36 -0.2
5,780,917 + BWI76_RS27870 0.75 -0.1
5,780,917 + BWI76_RS27870 0.75 -0.5
5,780,925 - BWI76_RS27870 0.77 -0.7
5,781,046 + BWI76_RS27875 0.14 -1.1
5,781,091 + BWI76_RS27875 0.27 -0.3
5,781,539 - -0.2
5,781,613 - +0.1
5,781,697 + BWI76_RS27880 0.13 +0.1
5,782,010 + BWI76_RS27880 0.37 -0.3
5,782,044 + BWI76_RS27880 0.39 +1.0
5,782,052 - BWI76_RS27880 0.40 -0.0
5,782,053 - BWI76_RS27880 0.40 +1.6
5,782,105 - BWI76_RS27880 0.44 -0.5
5,782,191 + BWI76_RS27880 0.50 +0.1
5,782,262 - BWI76_RS27880 0.56 -1.7
5,782,295 - BWI76_RS27880 0.58 +0.4
5,782,295 - BWI76_RS27880 0.58 -0.1

Or see this region's nucleotide sequence