Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26570

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26565 and BWI76_RS26570 are separated by 230 nucleotidesBWI76_RS26570 and BWI76_RS26575 are separated by 68 nucleotidesBWI76_RS26575 and BWI76_RS26580 are separated by 380 nucleotides BWI76_RS26565: BWI76_RS26565 - membrane protein, at 5,498,675 to 5,499,871 _RS26565 BWI76_RS26570: BWI76_RS26570 - anion permease, at 5,500,102 to 5,501,598 _RS26570 BWI76_RS26575: BWI76_RS26575 - universal stress protein B, at 5,501,667 to 5,502,002 _RS26575 BWI76_RS26580: BWI76_RS26580 - universal stress protein A, at 5,502,383 to 5,502,820 _RS26580 Position (kb) 5500 5501 5502Strain fitness (log2 ratio) -2 -1 0 1 2at 5499.346 kb on + strand, within BWI76_RS26565at 5499.354 kb on - strand, within BWI76_RS26565at 5499.455 kb on - strand, within BWI76_RS26565at 5499.792 kb on + strandat 5499.864 kb on - strandat 5499.864 kb on - strandat 5499.893 kb on - strandat 5500.097 kb on + strandat 5500.318 kb on + strand, within BWI76_RS26570at 5500.804 kb on + strand, within BWI76_RS26570at 5500.822 kb on - strand, within BWI76_RS26570at 5500.844 kb on + strand, within BWI76_RS26570at 5501.354 kb on + strand, within BWI76_RS26570at 5501.362 kb on - strand, within BWI76_RS26570at 5501.372 kb on - strand, within BWI76_RS26570at 5501.579 kb on - strandat 5501.796 kb on - strand, within BWI76_RS26575at 5501.796 kb on - strand, within BWI76_RS26575at 5501.808 kb on - strand, within BWI76_RS26575at 5501.814 kb on - strand, within BWI76_RS26575at 5501.826 kb on - strand, within BWI76_RS26575at 5501.974 kb on + strandat 5501.974 kb on + strandat 5501.974 kb on + strandat 5501.982 kb on - strandat 5501.982 kb on - strandat 5502.005 kb on - strandat 5502.043 kb on - strandat 5502.077 kb on + strandat 5502.077 kb on + strandat 5502.085 kb on - strandat 5502.090 kb on + strandat 5502.161 kb on + strandat 5502.161 kb on + strandat 5502.283 kb on + strandat 5502.283 kb on + strandat 5502.291 kb on - strandat 5502.291 kb on - strandat 5502.344 kb on + strandat 5502.352 kb on - strandat 5502.381 kb on - strandat 5502.381 kb on - strandat 5502.381 kb on - strandat 5502.408 kb on + strandat 5502.408 kb on + strandat 5502.416 kb on - strandat 5502.416 kb on - strandat 5502.416 kb on - strandat 5502.469 kb on + strand, within BWI76_RS26580at 5502.482 kb on - strand, within BWI76_RS26580at 5502.485 kb on + strand, within BWI76_RS26580at 5502.508 kb on - strand, within BWI76_RS26580at 5502.515 kb on + strand, within BWI76_RS26580

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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5,499,346 + BWI76_RS26565 0.56 -0.9
5,499,354 - BWI76_RS26565 0.57 +0.3
5,499,455 - BWI76_RS26565 0.65 +0.3
5,499,792 + -0.7
5,499,864 - -0.4
5,499,864 - +0.3
5,499,893 - +0.0
5,500,097 + +0.1
5,500,318 + BWI76_RS26570 0.14 -0.2
5,500,804 + BWI76_RS26570 0.47 +0.7
5,500,822 - BWI76_RS26570 0.48 -2.1
5,500,844 + BWI76_RS26570 0.50 -2.0
5,501,354 + BWI76_RS26570 0.84 -0.4
5,501,362 - BWI76_RS26570 0.84 -0.9
5,501,372 - BWI76_RS26570 0.85 -2.3
5,501,579 - +1.2
5,501,796 - BWI76_RS26575 0.38 +0.1
5,501,796 - BWI76_RS26575 0.38 -0.0
5,501,808 - BWI76_RS26575 0.42 -0.0
5,501,814 - BWI76_RS26575 0.44 -0.3
5,501,826 - BWI76_RS26575 0.47 +0.1
5,501,974 + +0.6
5,501,974 + -0.7
5,501,974 + +1.0
5,501,982 - +1.2
5,501,982 - -0.9
5,502,005 - +0.3
5,502,043 - -0.6
5,502,077 + +0.7
5,502,077 + -1.0
5,502,085 - -0.4
5,502,090 + -0.0
5,502,161 + +1.4
5,502,161 + +0.1
5,502,283 + +0.3
5,502,283 + +0.6
5,502,291 - +0.1
5,502,291 - +2.0
5,502,344 + -1.2
5,502,352 - +0.3
5,502,381 - +1.8
5,502,381 - -1.4
5,502,381 - +0.8
5,502,408 + -0.1
5,502,408 + +0.6
5,502,416 - -0.2
5,502,416 - +0.4
5,502,416 - -0.2
5,502,469 + BWI76_RS26580 0.20 +0.8
5,502,482 - BWI76_RS26580 0.23 +1.5
5,502,485 + BWI76_RS26580 0.23 +0.2
5,502,508 - BWI76_RS26580 0.29 +1.0
5,502,515 + BWI76_RS26580 0.30 +0.9

Or see this region's nucleotide sequence