Experiment: A22 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24935 and BWI76_RS24940 are separated by 72 nucleotides BWI76_RS24940 and BWI76_RS24945 are separated by 128 nucleotides BWI76_RS24945 and BWI76_RS24950 overlap by 21 nucleotides BWI76_RS24950 and BWI76_RS24955 are separated by 55 nucleotides BWI76_RS24955 and BWI76_RS24960 overlap by 14 nucleotides
BWI76_RS24935: BWI76_RS24935 - hypothetical protein, at 5,195,269 to 5,196,309
_RS24935
BWI76_RS24940: BWI76_RS24940 - hypothetical protein, at 5,196,382 to 5,197,029
_RS24940
BWI76_RS24945: BWI76_RS24945 - glutamine amidotransferase, at 5,197,158 to 5,197,676
_RS24945
BWI76_RS24950: BWI76_RS24950 - hypothetical protein, at 5,197,656 to 5,198,099
_RS24950
BWI76_RS24955: BWI76_RS24955 - hypothetical protein, at 5,198,155 to 5,198,439
_RS24955
BWI76_RS24960: BWI76_RS24960 - N-acetyltransferase, at 5,198,426 to 5,198,929
_RS24960
Position (kb) 5197
5198 Strain fitness (log2 ratio) -1
0
1 at 5196.290 kb on + strand at 5196.343 kb on + strand at 5196.503 kb on + strand, within BWI76_RS24940 at 5196.869 kb on + strand, within BWI76_RS24940 at 5196.877 kb on - strand, within BWI76_RS24940 at 5196.877 kb on - strand, within BWI76_RS24940 at 5197.147 kb on - strand at 5197.174 kb on - strand at 5197.206 kb on + strand at 5197.251 kb on - strand, within BWI76_RS24945 at 5197.795 kb on + strand, within BWI76_RS24950 at 5197.854 kb on + strand, within BWI76_RS24950 at 5197.901 kb on - strand, within BWI76_RS24950 at 5198.105 kb on - strand at 5198.121 kb on + strand at 5198.124 kb on + strand at 5198.129 kb on + strand at 5198.129 kb on + strand at 5198.137 kb on - strand at 5198.231 kb on + strand, within BWI76_RS24955 at 5198.344 kb on - strand, within BWI76_RS24955 at 5198.656 kb on + strand, within BWI76_RS24960
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.1 mg/ml remove 5,196,290 + +0.1 5,196,343 + -0.1 5,196,503 + BWI76_RS24940 0.19 -1.1 5,196,869 + BWI76_RS24940 0.75 -1.3 5,196,877 - BWI76_RS24940 0.76 -0.2 5,196,877 - BWI76_RS24940 0.76 -0.0 5,197,147 - +0.3 5,197,174 - +0.2 5,197,206 + -0.3 5,197,251 - BWI76_RS24945 0.18 -0.7 5,197,795 + BWI76_RS24950 0.31 +0.2 5,197,854 + BWI76_RS24950 0.45 -0.7 5,197,901 - BWI76_RS24950 0.55 +0.0 5,198,105 - +0.1 5,198,121 + -1.0 5,198,124 + -0.3 5,198,129 + +1.3 5,198,129 + -0.7 5,198,137 - +0.2 5,198,231 + BWI76_RS24955 0.27 -0.4 5,198,344 - BWI76_RS24955 0.66 -0.4 5,198,656 + BWI76_RS24960 0.46 +0.1
Or see this region's nucleotide sequence