Experiment: A22 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20890 and BWI76_RS20895 are separated by 120 nucleotides BWI76_RS20895 and BWI76_RS20900 are separated by 108 nucleotides BWI76_RS20900 and BWI76_RS20905 are separated by 16 nucleotides
BWI76_RS20890: BWI76_RS20890 - neutral zinc metallopeptidase, at 4,368,605 to 4,369,474
_RS20890
BWI76_RS20895: BWI76_RS20895 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 4,369,595 to 4,370,308
_RS20895
BWI76_RS20900: BWI76_RS20900 - outer membrane protein assembly factor BamC, at 4,370,417 to 4,371,451
_RS20900
BWI76_RS20905: BWI76_RS20905 - 4-hydroxy-tetrahydrodipicolinate synthase, at 4,371,468 to 4,372,346
_RS20905
Position (kb)
4370
4371
4372 Strain fitness (log2 ratio)
-1
0
1 at 4369.646 kb on - strand at 4369.705 kb on - strand, within BWI76_RS20895 at 4369.745 kb on - strand, within BWI76_RS20895 at 4369.755 kb on + strand, within BWI76_RS20895 at 4369.755 kb on + strand, within BWI76_RS20895 at 4369.755 kb on + strand, within BWI76_RS20895 at 4370.032 kb on - strand, within BWI76_RS20895 at 4370.095 kb on + strand, within BWI76_RS20895 at 4370.460 kb on + strand at 4370.759 kb on - strand, within BWI76_RS20900 at 4370.981 kb on + strand, within BWI76_RS20900 at 4371.449 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.1 mg/ml remove 4,369,646 - -0.0 4,369,705 - BWI76_RS20895 0.15 -0.4 4,369,745 - BWI76_RS20895 0.21 +0.5 4,369,755 + BWI76_RS20895 0.22 -1.7 4,369,755 + BWI76_RS20895 0.22 +0.7 4,369,755 + BWI76_RS20895 0.22 +0.2 4,370,032 - BWI76_RS20895 0.61 +0.1 4,370,095 + BWI76_RS20895 0.70 -1.4 4,370,460 + +1.0 4,370,759 - BWI76_RS20900 0.33 -0.8 4,370,981 + BWI76_RS20900 0.54 -1.3 4,371,449 - -0.5
Or see this region's nucleotide sequence