Experiment: A22 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17340 and BWI76_RS17345 are separated by 311 nucleotides BWI76_RS17345 and BWI76_RS17350 are separated by 10 nucleotides BWI76_RS17350 and BWI76_RS17355 overlap by 4 nucleotides
BWI76_RS17340: BWI76_RS17340 - NarK family nitrate/nitrite MFS transporter, at 3,592,448 to 3,593,836
_RS17340
BWI76_RS17345: BWI76_RS17345 - nitrate/nitrite two-component system sensor histidine kinase NarX, at 3,594,148 to 3,595,926
_RS17345
BWI76_RS17350: BWI76_RS17350 - DNA-binding response regulator, at 3,595,937 to 3,596,587
_RS17350
BWI76_RS17355: BWI76_RS17355 - YchO family inverse autotransporter domain-containing protein, at 3,596,584 to 3,597,963
_RS17355
Position (kb)
3594
3595
3596 Strain fitness (log2 ratio)
-1
0
1 at 3593.420 kb on - strand, within BWI76_RS17340 at 3593.531 kb on - strand, within BWI76_RS17340 at 3593.651 kb on - strand at 3593.832 kb on + strand at 3593.842 kb on + strand at 3594.265 kb on + strand at 3594.273 kb on - strand at 3594.325 kb on - strand at 3594.618 kb on + strand, within BWI76_RS17345 at 3595.056 kb on + strand, within BWI76_RS17345 at 3595.157 kb on + strand, within BWI76_RS17345 at 3595.701 kb on + strand, within BWI76_RS17345 at 3596.379 kb on + strand, within BWI76_RS17350 at 3596.476 kb on + strand, within BWI76_RS17350 at 3596.924 kb on - strand, within BWI76_RS17355
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.1 mg/ml remove 3,593,420 - BWI76_RS17340 0.70 -0.1 3,593,531 - BWI76_RS17340 0.78 +0.1 3,593,651 - +0.7 3,593,832 + +0.2 3,593,842 + -0.2 3,594,265 + +0.5 3,594,273 - -0.2 3,594,325 - -0.8 3,594,618 + BWI76_RS17345 0.26 -0.9 3,595,056 + BWI76_RS17345 0.51 -0.3 3,595,157 + BWI76_RS17345 0.57 -1.0 3,595,701 + BWI76_RS17345 0.87 -0.7 3,596,379 + BWI76_RS17350 0.68 -1.0 3,596,476 + BWI76_RS17350 0.83 -0.1 3,596,924 - BWI76_RS17355 0.25 -0.5
Or see this region's nucleotide sequence