Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15630

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15610 and BWI76_RS15615 are separated by 2 nucleotidesBWI76_RS15615 and BWI76_RS15620 overlap by 1 nucleotidesBWI76_RS15620 and BWI76_RS15625 are separated by 60 nucleotidesBWI76_RS15625 and BWI76_RS15630 are separated by 9 nucleotidesBWI76_RS15630 and BWI76_RS15635 are separated by 17 nucleotidesBWI76_RS15635 and BWI76_RS15640 are separated by 12 nucleotides BWI76_RS15610: BWI76_RS15610 - hypothetical protein, at 3,265,591 to 3,265,953 _RS15610 BWI76_RS15615: BWI76_RS15615 - hypothetical protein, at 3,265,956 to 3,266,126 _RS15615 BWI76_RS15620: BWI76_RS15620 - hypothetical protein, at 3,266,126 to 3,266,527 _RS15620 BWI76_RS15625: BWI76_RS15625 - hypothetical protein, at 3,266,588 to 3,266,770 _RS15625 BWI76_RS15630: BWI76_RS15630 - hypothetical protein, at 3,266,780 to 3,267,856 _RS15630 BWI76_RS15635: BWI76_RS15635 - hypothetical protein, at 3,267,874 to 3,268,320 _RS15635 BWI76_RS15640: BWI76_RS15640 - hypothetical protein, at 3,268,333 to 3,269,598 _RS15640 Position (kb) 3266 3267 3268Strain fitness (log2 ratio) -2 -1 0 1at 3266.131 kb on - strandat 3266.256 kb on - strand, within BWI76_RS15620at 3266.502 kb on + strandat 3266.510 kb on - strandat 3266.702 kb on - strand, within BWI76_RS15625at 3266.964 kb on - strand, within BWI76_RS15630at 3267.066 kb on + strandat 3267.237 kb on - strand, within BWI76_RS15630at 3267.495 kb on - strand, within BWI76_RS15630at 3267.965 kb on - strand, within BWI76_RS15635at 3267.965 kb on - strand, within BWI76_RS15635at 3268.068 kb on - strand, within BWI76_RS15635at 3268.143 kb on - strand, within BWI76_RS15635at 3268.187 kb on + strand, within BWI76_RS15635at 3268.271 kb on + strand, within BWI76_RS15635at 3268.279 kb on - strandat 3268.771 kb on + strand, within BWI76_RS15640at 3268.836 kb on - strand, within BWI76_RS15640

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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3,266,131 - +1.0
3,266,256 - BWI76_RS15620 0.32 -0.8
3,266,502 + -1.5
3,266,510 - -0.6
3,266,702 - BWI76_RS15625 0.62 -0.6
3,266,964 - BWI76_RS15630 0.17 -1.2
3,267,066 + +0.7
3,267,237 - BWI76_RS15630 0.42 -1.2
3,267,495 - BWI76_RS15630 0.66 -0.1
3,267,965 - BWI76_RS15635 0.20 -0.3
3,267,965 - BWI76_RS15635 0.20 -2.4
3,268,068 - BWI76_RS15635 0.43 -0.6
3,268,143 - BWI76_RS15635 0.60 -0.9
3,268,187 + BWI76_RS15635 0.70 +0.2
3,268,271 + BWI76_RS15635 0.89 -1.9
3,268,279 - +0.3
3,268,771 + BWI76_RS15640 0.35 -0.3
3,268,836 - BWI76_RS15640 0.40 -0.5

Or see this region's nucleotide sequence