Experiment: A22 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15525 and BWI76_RS15530 overlap by 14 nucleotides BWI76_RS15530 and BWI76_RS15535 overlap by 4 nucleotides BWI76_RS15535 and BWI76_RS15540 overlap by 1 nucleotides BWI76_RS15540 and BWI76_RS15545 are separated by 117 nucleotides BWI76_RS15545 and BWI76_RS15550 are separated by 40 nucleotides
BWI76_RS15525: BWI76_RS15525 - hypothetical protein, at 3,252,704 to 3,255,181
_RS15525
BWI76_RS15530: BWI76_RS15530 - hypothetical protein, at 3,255,168 to 3,255,563
_RS15530
BWI76_RS15535: BWI76_RS15535 - hypothetical protein, at 3,255,560 to 3,256,030
_RS15535
BWI76_RS15540: BWI76_RS15540 - hypothetical protein, at 3,256,030 to 3,256,506
_RS15540
BWI76_RS15545: BWI76_RS15545 - hypothetical protein, at 3,256,624 to 3,256,911
_RS15545
BWI76_RS15550: BWI76_RS15550 - hypothetical protein, at 3,256,952 to 3,259,612
_RS15550
Position (kb)
3255
3256
3257 Strain fitness (log2 ratio)
-1
0
1 at 3254.622 kb on + strand, within BWI76_RS15525 at 3254.692 kb on + strand, within BWI76_RS15525 at 3254.700 kb on - strand, within BWI76_RS15525 at 3254.829 kb on + strand, within BWI76_RS15525 at 3255.017 kb on - strand at 3255.432 kb on + strand, within BWI76_RS15530 at 3255.517 kb on + strand at 3255.517 kb on + strand, within BWI76_RS15530 at 3255.525 kb on - strand at 3255.525 kb on - strand at 3255.555 kb on - strand at 3255.574 kb on + strand at 3255.574 kb on + strand at 3255.582 kb on - strand at 3255.582 kb on - strand at 3255.642 kb on - strand, within BWI76_RS15535 at 3255.854 kb on - strand, within BWI76_RS15535 at 3255.979 kb on + strand, within BWI76_RS15535 at 3255.987 kb on - strand at 3256.015 kb on + strand at 3256.131 kb on + strand, within BWI76_RS15540 at 3256.328 kb on + strand, within BWI76_RS15540 at 3256.375 kb on - strand, within BWI76_RS15540 at 3256.428 kb on + strand, within BWI76_RS15540 at 3256.433 kb on + strand, within BWI76_RS15540 at 3256.433 kb on + strand, within BWI76_RS15540 at 3256.441 kb on - strand, within BWI76_RS15540 at 3256.450 kb on + strand, within BWI76_RS15540 at 3256.623 kb on - strand at 3256.664 kb on + strand, within BWI76_RS15545 at 3256.693 kb on + strand, within BWI76_RS15545 at 3256.708 kb on - strand, within BWI76_RS15545 at 3256.796 kb on + strand, within BWI76_RS15545 at 3256.836 kb on + strand, within BWI76_RS15545 at 3256.944 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.1 mg/ml remove 3,254,622 + BWI76_RS15525 0.77 -0.2 3,254,692 + BWI76_RS15525 0.80 +0.7 3,254,700 - BWI76_RS15525 0.81 +0.0 3,254,829 + BWI76_RS15525 0.86 -0.6 3,255,017 - +1.0 3,255,432 + BWI76_RS15530 0.67 +0.2 3,255,517 + +1.7 3,255,517 + BWI76_RS15530 0.88 -0.6 3,255,525 - -0.9 3,255,525 - -0.3 3,255,555 - +0.1 3,255,574 + -0.9 3,255,574 + -1.0 3,255,582 - -0.3 3,255,582 - -0.9 3,255,642 - BWI76_RS15535 0.17 -0.5 3,255,854 - BWI76_RS15535 0.62 -1.0 3,255,979 + BWI76_RS15535 0.89 -0.9 3,255,987 - -0.0 3,256,015 + +0.3 3,256,131 + BWI76_RS15540 0.21 -0.1 3,256,328 + BWI76_RS15540 0.62 -1.0 3,256,375 - BWI76_RS15540 0.72 +0.5 3,256,428 + BWI76_RS15540 0.83 -0.2 3,256,433 + BWI76_RS15540 0.84 -0.3 3,256,433 + BWI76_RS15540 0.84 -0.2 3,256,441 - BWI76_RS15540 0.86 +0.9 3,256,450 + BWI76_RS15540 0.88 -0.2 3,256,623 - -0.2 3,256,664 + BWI76_RS15545 0.14 +0.3 3,256,693 + BWI76_RS15545 0.24 -0.3 3,256,708 - BWI76_RS15545 0.29 -0.2 3,256,796 + BWI76_RS15545 0.60 -0.4 3,256,836 + BWI76_RS15545 0.74 +0.9 3,256,944 + -0.5
Or see this region's nucleotide sequence