Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09275

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09265 and BWI76_RS09270 are separated by 140 nucleotidesBWI76_RS09270 and BWI76_RS09275 are separated by 16 nucleotidesBWI76_RS09275 and BWI76_RS09280 are separated by 3 nucleotidesBWI76_RS09280 and BWI76_RS09285 are separated by 95 nucleotides BWI76_RS09265: BWI76_RS09265 - oxidoreductase, at 1,951,152 to 1,952,915 _RS09265 BWI76_RS09270: BWI76_RS09270 - capsid scaffold-like protein, at 1,953,056 to 1,953,889 _RS09270 BWI76_RS09275: BWI76_RS09275 - major capsid protein, at 1,953,906 to 1,954,958 _RS09275 BWI76_RS09280: BWI76_RS09280 - terminase endonuclease subunit, at 1,954,962 to 1,955,615 _RS09280 BWI76_RS09285: BWI76_RS09285 - hypothetical protein, at 1,955,711 to 1,956,175 _RS09285 Position (kb) 1953 1954 1955Strain fitness (log2 ratio) -2 -1 0 1at 1952.935 kb on + strandat 1952.938 kb on - strandat 1952.993 kb on + strandat 1953.153 kb on + strand, within BWI76_RS09270at 1953.166 kb on + strand, within BWI76_RS09270at 1953.166 kb on + strand, within BWI76_RS09270at 1953.166 kb on + strand, within BWI76_RS09270at 1953.209 kb on + strand, within BWI76_RS09270at 1953.209 kb on + strand, within BWI76_RS09270at 1953.209 kb on + strand, within BWI76_RS09270at 1953.420 kb on + strand, within BWI76_RS09270at 1953.694 kb on - strand, within BWI76_RS09270at 1953.741 kb on - strand, within BWI76_RS09270at 1954.046 kb on - strand, within BWI76_RS09275at 1954.208 kb on - strand, within BWI76_RS09275at 1954.310 kb on + strand, within BWI76_RS09275at 1954.325 kb on - strand, within BWI76_RS09275at 1954.356 kb on - strand, within BWI76_RS09275at 1954.620 kb on - strand, within BWI76_RS09275at 1954.908 kb on - strandat 1955.050 kb on + strand, within BWI76_RS09280at 1955.129 kb on + strand, within BWI76_RS09280at 1955.441 kb on + strand, within BWI76_RS09280at 1955.517 kb on + strand, within BWI76_RS09280at 1955.517 kb on + strand, within BWI76_RS09280

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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1,952,935 + +0.4
1,952,938 - +0.5
1,952,993 + -0.4
1,953,153 + BWI76_RS09270 0.12 -0.3
1,953,166 + BWI76_RS09270 0.13 +0.5
1,953,166 + BWI76_RS09270 0.13 +0.3
1,953,166 + BWI76_RS09270 0.13 -0.2
1,953,209 + BWI76_RS09270 0.18 +0.5
1,953,209 + BWI76_RS09270 0.18 -0.2
1,953,209 + BWI76_RS09270 0.18 -0.1
1,953,420 + BWI76_RS09270 0.44 +0.1
1,953,694 - BWI76_RS09270 0.76 +0.8
1,953,741 - BWI76_RS09270 0.82 -1.2
1,954,046 - BWI76_RS09275 0.13 +0.1
1,954,208 - BWI76_RS09275 0.29 +0.1
1,954,310 + BWI76_RS09275 0.38 -1.2
1,954,325 - BWI76_RS09275 0.40 -1.8
1,954,356 - BWI76_RS09275 0.43 -0.9
1,954,620 - BWI76_RS09275 0.68 -0.9
1,954,908 - +0.6
1,955,050 + BWI76_RS09280 0.13 -0.1
1,955,129 + BWI76_RS09280 0.26 +0.0
1,955,441 + BWI76_RS09280 0.73 +0.6
1,955,517 + BWI76_RS09280 0.85 +0.2
1,955,517 + BWI76_RS09280 0.85 -0.1

Or see this region's nucleotide sequence