Experiment: A22 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09020 and BWI76_RS09025 are separated by 70 nucleotides BWI76_RS09025 and BWI76_RS09030 are separated by 43 nucleotides BWI76_RS09030 and BWI76_RS09035 are separated by 190 nucleotides
BWI76_RS09020: BWI76_RS09020 - 6-phospho-beta-glucosidase, at 1,900,097 to 1,901,473
_RS09020
BWI76_RS09025: BWI76_RS09025 - GntR family transcriptional regulator, at 1,901,544 to 1,902,260
_RS09025
BWI76_RS09030: BWI76_RS09030 - transpeptidase, at 1,902,304 to 1,903,218
_RS09030
BWI76_RS09035: BWI76_RS09035 - protein tyrosine/serine phosphatase, at 1,903,409 to 1,904,191
_RS09035
Position (kb) 1902
1903
1904 Strain fitness (log2 ratio) -2
-1
0
1 at 1901.409 kb on - strand at 1901.496 kb on - strand at 1901.501 kb on - strand at 1901.700 kb on + strand, within BWI76_RS09025 at 1901.735 kb on - strand, within BWI76_RS09025 at 1902.048 kb on - strand, within BWI76_RS09025 at 1902.391 kb on - strand at 1902.523 kb on + strand, within BWI76_RS09030 at 1902.598 kb on + strand, within BWI76_RS09030 at 1902.640 kb on + strand, within BWI76_RS09030 at 1902.840 kb on + strand, within BWI76_RS09030 at 1902.848 kb on - strand, within BWI76_RS09030 at 1902.913 kb on + strand, within BWI76_RS09030 at 1903.201 kb on + strand at 1903.632 kb on + strand, within BWI76_RS09035 at 1903.632 kb on + strand, within BWI76_RS09035 at 1903.717 kb on - strand, within BWI76_RS09035 at 1903.737 kb on + strand, within BWI76_RS09035 at 1903.883 kb on - strand, within BWI76_RS09035 at 1904.009 kb on + strand, within BWI76_RS09035
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.1 mg/ml remove 1,901,409 - -1.4 1,901,496 - +0.5 1,901,501 - +0.0 1,901,700 + BWI76_RS09025 0.22 +0.0 1,901,735 - BWI76_RS09025 0.27 +1.7 1,902,048 - BWI76_RS09025 0.70 +1.4 1,902,391 - +0.1 1,902,523 + BWI76_RS09030 0.24 -1.0 1,902,598 + BWI76_RS09030 0.32 -0.7 1,902,640 + BWI76_RS09030 0.37 -0.4 1,902,840 + BWI76_RS09030 0.59 -1.9 1,902,848 - BWI76_RS09030 0.59 -0.3 1,902,913 + BWI76_RS09030 0.67 -0.0 1,903,201 + -0.1 1,903,632 + BWI76_RS09035 0.28 +0.1 1,903,632 + BWI76_RS09035 0.28 +0.1 1,903,717 - BWI76_RS09035 0.39 +0.4 1,903,737 + BWI76_RS09035 0.42 -0.7 1,903,883 - BWI76_RS09035 0.61 +0.2 1,904,009 + BWI76_RS09035 0.77 +0.1
Or see this region's nucleotide sequence