Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07075

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07065 and BWI76_RS07070 overlap by 4 nucleotidesBWI76_RS07070 and BWI76_RS07075 are separated by 96 nucleotidesBWI76_RS07075 and BWI76_RS07080 are separated by 106 nucleotidesBWI76_RS07080 and BWI76_RS07085 are separated by 3 nucleotides BWI76_RS07065: BWI76_RS07065 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 1,486,550 to 1,487,617 _RS07065 BWI76_RS07070: BWI76_RS07070 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 1,487,614 to 1,488,123 _RS07070 BWI76_RS07075: BWI76_RS07075 - hypothetical protein, at 1,488,220 to 1,488,549 _RS07075 BWI76_RS07080: BWI76_RS07080 - UDP-2,3-diacylglucosamine diphosphatase, at 1,488,656 to 1,489,378 _RS07080 BWI76_RS07085: BWI76_RS07085 - peptidyl-prolyl cis-trans isomerase, at 1,489,382 to 1,489,876 _RS07085 Position (kb) 1488 1489Strain fitness (log2 ratio) -1 0 1 2at 1487.222 kb on + strand, within BWI76_RS07065at 1487.293 kb on - strand, within BWI76_RS07065at 1487.293 kb on - strand, within BWI76_RS07065at 1487.639 kb on - strandat 1487.641 kb on + strandat 1487.694 kb on + strand, within BWI76_RS07070at 1487.835 kb on - strand, within BWI76_RS07070at 1487.847 kb on - strand, within BWI76_RS07070at 1487.901 kb on - strand, within BWI76_RS07070at 1487.962 kb on - strand, within BWI76_RS07070at 1488.071 kb on + strand, within BWI76_RS07070at 1488.148 kb on + strandat 1488.156 kb on - strandat 1488.158 kb on + strandat 1488.158 kb on + strandat 1488.344 kb on + strand, within BWI76_RS07075at 1488.344 kb on + strand, within BWI76_RS07075at 1488.375 kb on + strand, within BWI76_RS07075at 1488.435 kb on + strand, within BWI76_RS07075at 1489.529 kb on - strand, within BWI76_RS07085

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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1,487,222 + BWI76_RS07065 0.63 -0.4
1,487,293 - BWI76_RS07065 0.70 -0.0
1,487,293 - BWI76_RS07065 0.70 +0.1
1,487,639 - -0.2
1,487,641 + -0.6
1,487,694 + BWI76_RS07070 0.16 +0.1
1,487,835 - BWI76_RS07070 0.43 -1.1
1,487,847 - BWI76_RS07070 0.46 -0.5
1,487,901 - BWI76_RS07070 0.56 +0.6
1,487,962 - BWI76_RS07070 0.68 +1.9
1,488,071 + BWI76_RS07070 0.90 +1.5
1,488,148 + -0.7
1,488,156 - -0.5
1,488,158 + -1.4
1,488,158 + +1.3
1,488,344 + BWI76_RS07075 0.38 -0.5
1,488,344 + BWI76_RS07075 0.38 -0.6
1,488,375 + BWI76_RS07075 0.47 -1.2
1,488,435 + BWI76_RS07075 0.65 -0.6
1,489,529 - BWI76_RS07085 0.30 -0.2

Or see this region's nucleotide sequence