Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06730

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06725 and BWI76_RS06730 are separated by 269 nucleotidesBWI76_RS06730 and BWI76_RS06735 are separated by 111 nucleotidesBWI76_RS06735 and BWI76_RS06740 overlap by 1 nucleotidesBWI76_RS06740 and BWI76_RS06745 overlap by 4 nucleotides BWI76_RS06725: BWI76_RS06725 - maltoporin, at 1,411,076 to 1,412,347 _RS06725 BWI76_RS06730: BWI76_RS06730 - lac repressor, at 1,412,617 to 1,413,690 _RS06730 BWI76_RS06735: BWI76_RS06735 - 50S ribosomal protein L31, at 1,413,802 to 1,414,065 _RS06735 BWI76_RS06740: BWI76_RS06740 - 50S ribosomal protein L36, at 1,414,065 to 1,414,205 _RS06740 BWI76_RS06745: BWI76_RS06745 - N-acetyltransferase GCN5, at 1,414,202 to 1,414,900 _RS06745 Position (kb) 1412 1413 1414Strain fitness (log2 ratio) -2 -1 0 1at 1411.656 kb on + strand, within BWI76_RS06725at 1411.732 kb on + strand, within BWI76_RS06725at 1411.733 kb on + strand, within BWI76_RS06725at 1411.733 kb on - strand, within BWI76_RS06725at 1411.748 kb on + strand, within BWI76_RS06725at 1411.761 kb on - strand, within BWI76_RS06725at 1411.806 kb on - strand, within BWI76_RS06725at 1411.999 kb on + strand, within BWI76_RS06725at 1412.142 kb on - strand, within BWI76_RS06725at 1412.221 kb on + strandat 1412.229 kb on - strandat 1412.267 kb on - strandat 1412.300 kb on - strandat 1412.300 kb on - strandat 1412.697 kb on - strandat 1413.248 kb on + strand, within BWI76_RS06730at 1413.536 kb on - strand, within BWI76_RS06730at 1413.592 kb on + strandat 1413.622 kb on + strandat 1413.657 kb on + strandat 1413.657 kb on + strandat 1413.665 kb on - strandat 1413.907 kb on + strand, within BWI76_RS06735at 1414.080 kb on + strand, within BWI76_RS06740at 1414.090 kb on + strand, within BWI76_RS06740at 1414.169 kb on + strand, within BWI76_RS06740at 1414.533 kb on + strand, within BWI76_RS06745at 1414.656 kb on + strand, within BWI76_RS06745

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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1,411,656 + BWI76_RS06725 0.46 +0.6
1,411,732 + BWI76_RS06725 0.52 +0.7
1,411,733 + BWI76_RS06725 0.52 +0.5
1,411,733 - BWI76_RS06725 0.52 +0.2
1,411,748 + BWI76_RS06725 0.53 -0.3
1,411,761 - BWI76_RS06725 0.54 +1.1
1,411,806 - BWI76_RS06725 0.57 +0.2
1,411,999 + BWI76_RS06725 0.73 -0.4
1,412,142 - BWI76_RS06725 0.84 -0.2
1,412,221 + -0.3
1,412,229 - +0.1
1,412,267 - -0.4
1,412,300 - +0.4
1,412,300 - -0.6
1,412,697 - -2.1
1,413,248 + BWI76_RS06730 0.59 -0.9
1,413,536 - BWI76_RS06730 0.86 -0.7
1,413,592 + -0.5
1,413,622 + +0.1
1,413,657 + -0.9
1,413,657 + -0.6
1,413,665 - -0.5
1,413,907 + BWI76_RS06735 0.40 -0.6
1,414,080 + BWI76_RS06740 0.11 +0.6
1,414,090 + BWI76_RS06740 0.18 +0.0
1,414,169 + BWI76_RS06740 0.74 +0.6
1,414,533 + BWI76_RS06745 0.47 -0.9
1,414,656 + BWI76_RS06745 0.65 -0.2

Or see this region's nucleotide sequence