Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06105

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06095 and BWI76_RS06100 are separated by 200 nucleotidesBWI76_RS06100 and BWI76_RS06105 are separated by 117 nucleotidesBWI76_RS06105 and BWI76_RS06110 are separated by 18 nucleotides BWI76_RS06095: BWI76_RS06095 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH, at 1,281,598 to 1,282,758 _RS06095 BWI76_RS06100: BWI76_RS06100 - isochorismatase family protein, at 1,282,959 to 1,283,492 _RS06100 BWI76_RS06105: BWI76_RS06105 - microcin B17 transporter, at 1,283,610 to 1,284,830 _RS06105 BWI76_RS06110: BWI76_RS06110 - hypothetical protein, at 1,284,849 to 1,285,955 _RS06110 Position (kb) 1283 1284 1285Strain fitness (log2 ratio) -2 -1 0 1at 1282.682 kb on + strandat 1282.716 kb on + strandat 1282.990 kb on - strandat 1283.110 kb on + strand, within BWI76_RS06100at 1283.274 kb on + strand, within BWI76_RS06100at 1283.407 kb on - strand, within BWI76_RS06100at 1283.413 kb on + strand, within BWI76_RS06100at 1283.427 kb on + strand, within BWI76_RS06100at 1283.486 kb on + strandat 1283.542 kb on + strandat 1283.573 kb on - strandat 1283.601 kb on - strandat 1283.665 kb on + strandat 1283.723 kb on - strandat 1283.836 kb on - strand, within BWI76_RS06105at 1283.963 kb on + strand, within BWI76_RS06105at 1284.006 kb on - strand, within BWI76_RS06105at 1284.006 kb on - strand, within BWI76_RS06105at 1284.064 kb on - strand, within BWI76_RS06105at 1284.210 kb on + strand, within BWI76_RS06105at 1284.389 kb on + strand, within BWI76_RS06105at 1284.402 kb on - strand, within BWI76_RS06105at 1284.461 kb on - strand, within BWI76_RS06105at 1284.466 kb on - strand, within BWI76_RS06105at 1284.510 kb on - strand, within BWI76_RS06105at 1284.512 kb on + strand, within BWI76_RS06105at 1284.660 kb on - strand, within BWI76_RS06105at 1284.722 kb on + strandat 1284.780 kb on - strandat 1284.793 kb on + strandat 1284.840 kb on + strandat 1285.266 kb on + strand, within BWI76_RS06110at 1285.266 kb on + strand, within BWI76_RS06110at 1285.266 kb on + strand, within BWI76_RS06110at 1285.266 kb on + strand, within BWI76_RS06110at 1285.274 kb on - strand, within BWI76_RS06110at 1285.482 kb on + strand, within BWI76_RS06110

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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1,282,682 + +0.0
1,282,716 + +0.4
1,282,990 - -0.3
1,283,110 + BWI76_RS06100 0.28 -0.1
1,283,274 + BWI76_RS06100 0.59 -0.1
1,283,407 - BWI76_RS06100 0.84 -0.1
1,283,413 + BWI76_RS06100 0.85 -0.2
1,283,427 + BWI76_RS06100 0.88 -0.3
1,283,486 + +0.3
1,283,542 + -0.1
1,283,573 - -1.0
1,283,601 - +1.5
1,283,665 + -2.0
1,283,723 - -1.7
1,283,836 - BWI76_RS06105 0.19 -1.7
1,283,963 + BWI76_RS06105 0.29 -1.7
1,284,006 - BWI76_RS06105 0.32 -1.2
1,284,006 - BWI76_RS06105 0.32 -1.3
1,284,064 - BWI76_RS06105 0.37 -0.2
1,284,210 + BWI76_RS06105 0.49 -1.2
1,284,389 + BWI76_RS06105 0.64 -2.0
1,284,402 - BWI76_RS06105 0.65 -1.5
1,284,461 - BWI76_RS06105 0.70 -1.3
1,284,466 - BWI76_RS06105 0.70 -0.7
1,284,510 - BWI76_RS06105 0.74 -1.2
1,284,512 + BWI76_RS06105 0.74 -1.5
1,284,660 - BWI76_RS06105 0.86 -2.1
1,284,722 + -1.0
1,284,780 - -0.6
1,284,793 + +0.1
1,284,840 + -0.1
1,285,266 + BWI76_RS06110 0.38 -0.3
1,285,266 + BWI76_RS06110 0.38 +0.3
1,285,266 + BWI76_RS06110 0.38 +0.2
1,285,266 + BWI76_RS06110 0.38 +0.1
1,285,274 - BWI76_RS06110 0.38 +0.4
1,285,482 + BWI76_RS06110 0.57 +0.6

Or see this region's nucleotide sequence