Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04705

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04695 and BWI76_RS04700 are separated by 2 nucleotidesBWI76_RS04700 and BWI76_RS04705 are separated by 180 nucleotidesBWI76_RS04705 and BWI76_RS04710 are separated by 444 nucleotidesBWI76_RS04710 and BWI76_RS04715 overlap by 2 nucleotides BWI76_RS04695: BWI76_RS04695 - acetolactate synthase 3 large subunit, at 979,896 to 981,620 _RS04695 BWI76_RS04700: BWI76_RS04700 - acetolactate synthase small subunit, at 981,623 to 982,114 _RS04700 BWI76_RS04705: BWI76_RS04705 - DNA-binding transcriptional regulator FruR, at 982,295 to 983,299 _RS04705 BWI76_RS04710: BWI76_RS04710 - hypothetical protein, at 983,744 to 983,926 _RS04710 BWI76_RS04715: BWI76_RS04715 - division/cell wall cluster transcriptional repressor MraZ, at 983,925 to 984,383 _RS04715 Position (kb) 982 983 984Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 981.303 kb on + strand, within BWI76_RS04695at 981.351 kb on + strand, within BWI76_RS04695at 981.364 kb on - strand, within BWI76_RS04695at 981.388 kb on - strand, within BWI76_RS04695at 981.388 kb on - strand, within BWI76_RS04695at 981.542 kb on - strandat 981.551 kb on + strandat 981.551 kb on + strandat 981.551 kb on + strandat 981.559 kb on - strandat 981.593 kb on - strandat 981.617 kb on - strandat 981.665 kb on + strandat 981.801 kb on + strand, within BWI76_RS04700at 981.884 kb on - strand, within BWI76_RS04700at 982.063 kb on + strand, within BWI76_RS04700at 982.068 kb on + strandat 982.222 kb on + strandat 982.222 kb on + strandat 982.340 kb on + strandat 982.631 kb on + strand, within BWI76_RS04705at 982.647 kb on - strand, within BWI76_RS04705at 982.684 kb on - strand, within BWI76_RS04705at 982.730 kb on + strand, within BWI76_RS04705at 982.730 kb on + strand, within BWI76_RS04705at 982.757 kb on + strand, within BWI76_RS04705at 982.789 kb on - strand, within BWI76_RS04705at 983.020 kb on + strand, within BWI76_RS04705at 983.028 kb on - strand, within BWI76_RS04705at 983.066 kb on - strand, within BWI76_RS04705at 983.186 kb on - strand, within BWI76_RS04705at 983.251 kb on - strandat 983.265 kb on + strandat 983.282 kb on + strandat 983.297 kb on - strandat 983.318 kb on - strandat 983.324 kb on + strandat 983.344 kb on - strandat 983.346 kb on - strandat 983.393 kb on - strandat 983.414 kb on - strandat 983.474 kb on + strandat 983.482 kb on - strandat 983.554 kb on + strandat 983.565 kb on + strandat 983.572 kb on + strandat 983.572 kb on + strandat 983.572 kb on + strandat 983.572 kb on + strandat 983.572 kb on + strandat 983.572 kb on + strandat 983.573 kb on - strandat 983.574 kb on + strandat 983.575 kb on + strandat 983.577 kb on + strandat 983.577 kb on + strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.580 kb on - strandat 983.582 kb on - strandat 983.619 kb on + strandat 983.626 kb on - strandat 983.627 kb on - strandat 983.636 kb on - strandat 983.637 kb on + strandat 983.638 kb on + strandat 983.670 kb on - strandat 983.710 kb on + strandat 983.718 kb on - strandat 983.824 kb on + strand, within BWI76_RS04710at 983.826 kb on + strand, within BWI76_RS04710at 983.834 kb on - strand, within BWI76_RS04710at 983.849 kb on - strand, within BWI76_RS04710at 983.922 kb on + strandat 984.062 kb on + strand, within BWI76_RS04715

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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981,303 + BWI76_RS04695 0.82 -0.5
981,351 + BWI76_RS04695 0.84 -0.8
981,364 - BWI76_RS04695 0.85 -2.5
981,388 - BWI76_RS04695 0.86 +0.8
981,388 - BWI76_RS04695 0.86 +1.1
981,542 - +0.8
981,551 + -0.8
981,551 + -0.5
981,551 + -0.5
981,559 - -0.3
981,593 - -0.5
981,617 - +1.9
981,665 + -0.9
981,801 + BWI76_RS04700 0.36 +0.8
981,884 - BWI76_RS04700 0.53 +0.1
982,063 + BWI76_RS04700 0.89 +0.2
982,068 + +0.0
982,222 + -0.3
982,222 + -0.1
982,340 + -1.3
982,631 + BWI76_RS04705 0.33 -1.3
982,647 - BWI76_RS04705 0.35 -0.6
982,684 - BWI76_RS04705 0.39 -0.8
982,730 + BWI76_RS04705 0.43 -1.3
982,730 + BWI76_RS04705 0.43 +0.7
982,757 + BWI76_RS04705 0.46 +0.5
982,789 - BWI76_RS04705 0.49 -0.2
983,020 + BWI76_RS04705 0.72 -1.6
983,028 - BWI76_RS04705 0.73 -1.1
983,066 - BWI76_RS04705 0.77 -2.9
983,186 - BWI76_RS04705 0.89 -0.9
983,251 - +0.4
983,265 + -0.6
983,282 + -0.1
983,297 - -1.1
983,318 - +2.2
983,324 + -0.3
983,344 - -0.2
983,346 - -2.2
983,393 - +1.1
983,414 - +0.6
983,474 + -1.1
983,482 - +0.0
983,554 + -0.4
983,565 + -0.4
983,572 + -0.4
983,572 + +0.0
983,572 + -0.6
983,572 + -0.4
983,572 + -0.9
983,572 + -0.6
983,573 - -0.6
983,574 + -0.9
983,575 + -0.1
983,577 + -0.5
983,577 + -0.3
983,580 - -0.6
983,580 - +0.4
983,580 - -0.4
983,580 - -0.8
983,580 - -0.7
983,580 - -0.4
983,580 - -0.1
983,580 - +0.0
983,580 - -0.3
983,580 - -0.1
983,580 - -0.5
983,580 - -0.1
983,580 - -0.5
983,582 - -0.2
983,619 + -0.8
983,626 - -0.7
983,627 - +0.5
983,636 - +0.9
983,637 + -1.0
983,638 + -1.0
983,670 - +0.5
983,710 + -0.7
983,718 - -0.1
983,824 + BWI76_RS04710 0.44 -0.7
983,826 + BWI76_RS04710 0.45 -2.9
983,834 - BWI76_RS04710 0.49 -1.2
983,849 - BWI76_RS04710 0.57 +0.6
983,922 + -2.8
984,062 + BWI76_RS04715 0.30 -1.8

Or see this region's nucleotide sequence