Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02050

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02045 and BWI76_RS02050 are separated by 103 nucleotidesBWI76_RS02050 and BWI76_RS02055 overlap by 8 nucleotides BWI76_RS02045: BWI76_RS02045 - LysR family transcriptional regulator, at 421,398 to 422,294 _RS02045 BWI76_RS02050: BWI76_RS02050 - CidA/LrgA family protein, at 422,398 to 422,808 _RS02050 BWI76_RS02055: BWI76_RS02055 - murein hydrolase effector protein LrgB, at 422,801 to 423,490 _RS02055 Position (kb) 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 421.403 kb on - strandat 421.438 kb on + strandat 421.477 kb on - strandat 421.478 kb on - strandat 421.526 kb on - strand, within BWI76_RS02045at 421.540 kb on - strand, within BWI76_RS02045at 421.626 kb on - strand, within BWI76_RS02045at 421.950 kb on + strand, within BWI76_RS02045at 422.000 kb on + strand, within BWI76_RS02045at 422.148 kb on + strand, within BWI76_RS02045at 422.161 kb on - strand, within BWI76_RS02045at 422.308 kb on + strandat 422.316 kb on - strandat 422.316 kb on - strandat 422.355 kb on + strandat 422.355 kb on + strandat 422.355 kb on + strandat 422.355 kb on + strandat 422.355 kb on + strandat 422.355 kb on + strandat 422.355 kb on + strandat 422.356 kb on + strandat 422.356 kb on + strandat 422.363 kb on - strandat 422.363 kb on - strandat 422.363 kb on - strandat 422.363 kb on - strandat 422.363 kb on - strandat 422.363 kb on - strandat 422.363 kb on - strandat 422.363 kb on - strandat 422.368 kb on - strandat 422.415 kb on - strandat 422.418 kb on + strandat 422.429 kb on + strandat 422.429 kb on + strandat 422.437 kb on - strandat 422.461 kb on + strand, within BWI76_RS02050at 422.496 kb on + strand, within BWI76_RS02050at 422.782 kb on + strandat 422.792 kb on + strandat 422.792 kb on + strandat 422.792 kb on + strandat 422.816 kb on - strandat 422.978 kb on - strand, within BWI76_RS02055at 423.081 kb on + strand, within BWI76_RS02055at 423.182 kb on + strand, within BWI76_RS02055at 423.271 kb on - strand, within BWI76_RS02055at 423.339 kb on - strand, within BWI76_RS02055at 423.352 kb on - strand, within BWI76_RS02055at 423.384 kb on + strand, within BWI76_RS02055at 423.384 kb on + strand, within BWI76_RS02055at 423.392 kb on - strand, within BWI76_RS02055at 423.396 kb on + strand, within BWI76_RS02055at 423.467 kb on + strandat 423.467 kb on + strandat 423.474 kb on + strandat 423.474 kb on + strandat 423.484 kb on + strandat 423.484 kb on + strandat 423.484 kb on + strandat 423.484 kb on + strandat 423.484 kb on + strandat 423.484 kb on + strandat 423.487 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.492 kb on - strandat 423.493 kb on + strandat 423.500 kb on + strandat 423.503 kb on + strandat 423.511 kb on - strandat 423.522 kb on + strandat 423.525 kb on - strandat 423.525 kb on - strandat 423.525 kb on - strandat 423.525 kb on - strandat 423.530 kb on - strandat 423.559 kb on + strandat 423.559 kb on + strandat 423.559 kb on + strandat 423.559 kb on + strandat 423.559 kb on + strandat 423.559 kb on + strandat 423.559 kb on + strandat 423.567 kb on - strandat 423.567 kb on - strandat 423.567 kb on - strandat 423.567 kb on - strandat 423.621 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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421,403 - -0.3
421,438 + +0.3
421,477 - +0.7
421,478 - +0.8
421,526 - BWI76_RS02045 0.14 -1.7
421,540 - BWI76_RS02045 0.16 +0.1
421,626 - BWI76_RS02045 0.25 -0.3
421,950 + BWI76_RS02045 0.62 -1.0
422,000 + BWI76_RS02045 0.67 +0.2
422,148 + BWI76_RS02045 0.84 -1.1
422,161 - BWI76_RS02045 0.85 +0.1
422,308 + -0.5
422,316 - +1.1
422,316 - +0.2
422,355 + +0.4
422,355 + +0.0
422,355 + +0.2
422,355 + +0.2
422,355 + +1.3
422,355 + +0.0
422,355 + +0.4
422,356 + +0.8
422,356 + -0.1
422,363 - +1.0
422,363 - -0.2
422,363 - -0.1
422,363 - -0.8
422,363 - -0.3
422,363 - +0.1
422,363 - -0.1
422,363 - -0.2
422,368 - +0.8
422,415 - -0.2
422,418 + +0.6
422,429 + +0.3
422,429 + -0.1
422,437 - +0.9
422,461 + BWI76_RS02050 0.15 -0.7
422,496 + BWI76_RS02050 0.24 -1.2
422,782 + +0.0
422,792 + -0.9
422,792 + -0.2
422,792 + -0.0
422,816 - -0.7
422,978 - BWI76_RS02055 0.26 -0.1
423,081 + BWI76_RS02055 0.41 -0.1
423,182 + BWI76_RS02055 0.55 -2.6
423,271 - BWI76_RS02055 0.68 +0.2
423,339 - BWI76_RS02055 0.78 +0.2
423,352 - BWI76_RS02055 0.80 -0.2
423,384 + BWI76_RS02055 0.84 +0.2
423,384 + BWI76_RS02055 0.84 -0.3
423,392 - BWI76_RS02055 0.86 -0.6
423,396 + BWI76_RS02055 0.86 +0.2
423,467 + +0.2
423,467 + +0.7
423,474 + -0.7
423,474 + +0.3
423,484 + +1.7
423,484 + -0.3
423,484 + -0.9
423,484 + +0.3
423,484 + +0.1
423,484 + +0.1
423,487 - +0.7
423,492 - -0.7
423,492 - -0.1
423,492 - -0.2
423,492 - -0.1
423,492 - -0.3
423,492 - -0.1
423,492 - +0.0
423,492 - -0.3
423,492 - -1.3
423,492 - -1.2
423,492 - -1.0
423,492 - -0.4
423,493 + +1.9
423,500 + +0.4
423,503 + -0.2
423,511 - -0.7
423,522 + -0.8
423,525 - -0.4
423,525 - +0.2
423,525 - -0.6
423,525 - +0.4
423,530 - -0.7
423,559 + +0.2
423,559 + +0.6
423,559 + +0.4
423,559 + -1.6
423,559 + +0.4
423,559 + -1.7
423,559 + -0.5
423,567 - -0.7
423,567 - -0.1
423,567 - +0.6
423,567 - -0.8
423,621 + -0.9

Or see this region's nucleotide sequence