Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01220

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01210 and BWI76_RS01215 overlap by 1 nucleotidesBWI76_RS01215 and BWI76_RS01220 are separated by 77 nucleotidesBWI76_RS01220 and BWI76_RS01225 are separated by 354 nucleotides BWI76_RS01210: BWI76_RS01210 - tyrosine recombinase XerC, at 246,885 to 247,787 _RS01210 BWI76_RS01215: BWI76_RS01215 - flavin mononucleotide phosphatase, at 247,787 to 248,503 _RS01215 BWI76_RS01220: BWI76_RS01220 - DNA-dependent helicase II, at 248,581 to 250,743 _RS01220 BWI76_RS01225: BWI76_RS01225 - magnesium transporter CorA, at 251,098 to 252,048 _RS01225 Position (kb) 248 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1at 247.835 kb on - strandat 247.857 kb on + strandat 247.916 kb on - strand, within BWI76_RS01215at 248.806 kb on - strand, within BWI76_RS01220at 248.808 kb on + strand, within BWI76_RS01220at 248.811 kb on - strand, within BWI76_RS01220at 248.824 kb on - strand, within BWI76_RS01220at 248.878 kb on + strand, within BWI76_RS01220at 249.087 kb on - strand, within BWI76_RS01220at 249.369 kb on - strand, within BWI76_RS01220at 249.617 kb on + strand, within BWI76_RS01220at 249.695 kb on - strand, within BWI76_RS01220at 249.796 kb on + strand, within BWI76_RS01220at 249.853 kb on - strand, within BWI76_RS01220at 250.211 kb on - strand, within BWI76_RS01220at 250.245 kb on + strand, within BWI76_RS01220at 250.399 kb on + strand, within BWI76_RS01220at 250.507 kb on - strand, within BWI76_RS01220at 250.979 kb on + strandat 251.012 kb on + strandat 251.018 kb on + strandat 251.188 kb on - strandat 251.236 kb on + strand, within BWI76_RS01225at 251.255 kb on + strand, within BWI76_RS01225at 251.298 kb on + strand, within BWI76_RS01225at 251.366 kb on + strand, within BWI76_RS01225at 251.414 kb on + strand, within BWI76_RS01225at 251.547 kb on + strand, within BWI76_RS01225

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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247,835 - +0.2
247,857 + +0.5
247,916 - BWI76_RS01215 0.18 -0.5
248,806 - BWI76_RS01220 0.10 -3.4
248,808 + BWI76_RS01220 0.10 -1.4
248,811 - BWI76_RS01220 0.11 -2.6
248,824 - BWI76_RS01220 0.11 -2.4
248,878 + BWI76_RS01220 0.14 -1.8
249,087 - BWI76_RS01220 0.23 -1.7
249,369 - BWI76_RS01220 0.36 -3.5
249,617 + BWI76_RS01220 0.48 -2.6
249,695 - BWI76_RS01220 0.52 -0.8
249,796 + BWI76_RS01220 0.56 -3.7
249,853 - BWI76_RS01220 0.59 -0.2
250,211 - BWI76_RS01220 0.75 -1.8
250,245 + BWI76_RS01220 0.77 -1.3
250,399 + BWI76_RS01220 0.84 -0.4
250,507 - BWI76_RS01220 0.89 -0.1
250,979 + +1.4
251,012 + -0.2
251,018 + +0.2
251,188 - +0.4
251,236 + BWI76_RS01225 0.15 +0.4
251,255 + BWI76_RS01225 0.17 +0.3
251,298 + BWI76_RS01225 0.21 -0.8
251,366 + BWI76_RS01225 0.28 +0.6
251,414 + BWI76_RS01225 0.33 -0.5
251,547 + BWI76_RS01225 0.47 +0.8

Or see this region's nucleotide sequence