Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00715

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00705 and BWI76_RS00710 are separated by 71 nucleotidesBWI76_RS00710 and BWI76_RS00715 are separated by 91 nucleotidesBWI76_RS00715 and BWI76_RS00720 overlap by 4 nucleotidesBWI76_RS00720 and BWI76_RS00725 are separated by 149 nucleotides BWI76_RS00705: BWI76_RS00705 - superoxide dismutase, at 144,071 to 144,691 _RS00705 BWI76_RS00710: BWI76_RS00710 - 6-N-hydroxylaminopurine resistance protein, at 144,763 to 145,437 _RS00710 BWI76_RS00715: BWI76_RS00715 - two-component sensor histidine kinase, at 145,529 to 146,902 _RS00715 BWI76_RS00720: BWI76_RS00720 - DNA-binding response regulator, at 146,899 to 147,597 _RS00720 BWI76_RS00725: BWI76_RS00725 - periplasmic repressor CpxP, at 147,747 to 148,250 _RS00725 Position (kb) 145 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 144.704 kb on - strandat 144.802 kb on - strandat 145.079 kb on + strand, within BWI76_RS00710at 145.087 kb on - strand, within BWI76_RS00710at 145.478 kb on + strandat 145.560 kb on + strandat 145.686 kb on - strand, within BWI76_RS00715at 146.062 kb on + strand, within BWI76_RS00715at 146.068 kb on + strand, within BWI76_RS00715at 146.146 kb on - strandat 146.232 kb on - strand, within BWI76_RS00715at 146.232 kb on - strand, within BWI76_RS00715at 146.345 kb on - strand, within BWI76_RS00715at 146.348 kb on + strand, within BWI76_RS00715at 146.554 kb on + strand, within BWI76_RS00715at 147.037 kb on + strand, within BWI76_RS00720at 147.129 kb on + strand, within BWI76_RS00720at 147.356 kb on - strand, within BWI76_RS00720at 147.524 kb on - strand, within BWI76_RS00720at 147.661 kb on + strandat 147.669 kb on - strandat 147.669 kb on - strandat 147.861 kb on - strand, within BWI76_RS00725at 147.897 kb on - strand, within BWI76_RS00725

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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144,704 - -0.0
144,802 - -0.6
145,079 + BWI76_RS00710 0.47 -0.5
145,087 - BWI76_RS00710 0.48 -1.7
145,478 + -0.4
145,560 + -0.1
145,686 - BWI76_RS00715 0.11 -2.2
146,062 + BWI76_RS00715 0.39 -1.0
146,068 + BWI76_RS00715 0.39 -1.2
146,146 - +1.0
146,232 - BWI76_RS00715 0.51 -2.7
146,232 - BWI76_RS00715 0.51 -2.0
146,345 - BWI76_RS00715 0.59 -3.4
146,348 + BWI76_RS00715 0.60 -0.8
146,554 + BWI76_RS00715 0.75 +1.8
147,037 + BWI76_RS00720 0.20 -2.2
147,129 + BWI76_RS00720 0.33 -2.1
147,356 - BWI76_RS00720 0.65 -0.3
147,524 - BWI76_RS00720 0.89 -0.3
147,661 + +1.4
147,669 - +1.3
147,669 - -1.2
147,861 - BWI76_RS00725 0.23 -0.9
147,897 - BWI76_RS00725 0.30 -0.4

Or see this region's nucleotide sequence