Experiment: A22 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00700 and BWI76_RS00705 are separated by 291 nucleotides BWI76_RS00705 and BWI76_RS00710 are separated by 71 nucleotides BWI76_RS00710 and BWI76_RS00715 are separated by 91 nucleotides
BWI76_RS00700: BWI76_RS00700 - rhamnose/proton symporter RhaT, at 142,745 to 143,779
_RS00700
BWI76_RS00705: BWI76_RS00705 - superoxide dismutase, at 144,071 to 144,691
_RS00705
BWI76_RS00710: BWI76_RS00710 - 6-N-hydroxylaminopurine resistance protein, at 144,763 to 145,437
_RS00710
BWI76_RS00715: BWI76_RS00715 - two-component sensor histidine kinase, at 145,529 to 146,902
_RS00715
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 143.785 kb on - strand at 143.823 kb on + strand at 143.866 kb on - strand at 143.866 kb on - strand at 143.866 kb on - strand at 143.880 kb on + strand at 143.948 kb on + strand at 144.031 kb on + strand at 144.704 kb on - strand at 144.802 kb on - strand at 145.079 kb on + strand, within BWI76_RS00710 at 145.087 kb on - strand, within BWI76_RS00710 at 145.478 kb on + strand at 145.560 kb on + strand at 145.686 kb on - strand, within BWI76_RS00715 at 146.062 kb on + strand, within BWI76_RS00715 at 146.068 kb on + strand, within BWI76_RS00715 at 146.146 kb on - strand at 146.232 kb on - strand, within BWI76_RS00715 at 146.232 kb on - strand, within BWI76_RS00715 at 146.345 kb on - strand, within BWI76_RS00715 at 146.348 kb on + strand, within BWI76_RS00715
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.1 mg/ml remove 143,785 - +1.3 143,823 + -0.2 143,866 - +0.1 143,866 - -0.1 143,866 - -0.2 143,880 + -0.2 143,948 + +0.5 144,031 + -0.5 144,704 - -0.0 144,802 - -0.6 145,079 + BWI76_RS00710 0.47 -0.5 145,087 - BWI76_RS00710 0.48 -1.7 145,478 + -0.4 145,560 + -0.1 145,686 - BWI76_RS00715 0.11 -2.2 146,062 + BWI76_RS00715 0.39 -1.0 146,068 + BWI76_RS00715 0.39 -1.2 146,146 - +1.0 146,232 - BWI76_RS00715 0.51 -2.7 146,232 - BWI76_RS00715 0.51 -2.0 146,345 - BWI76_RS00715 0.59 -3.4 146,348 + BWI76_RS00715 0.60 -0.8
Or see this region's nucleotide sequence