Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00710

Experiment: A22 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00700 and BWI76_RS00705 are separated by 291 nucleotidesBWI76_RS00705 and BWI76_RS00710 are separated by 71 nucleotidesBWI76_RS00710 and BWI76_RS00715 are separated by 91 nucleotides BWI76_RS00700: BWI76_RS00700 - rhamnose/proton symporter RhaT, at 142,745 to 143,779 _RS00700 BWI76_RS00705: BWI76_RS00705 - superoxide dismutase, at 144,071 to 144,691 _RS00705 BWI76_RS00710: BWI76_RS00710 - 6-N-hydroxylaminopurine resistance protein, at 144,763 to 145,437 _RS00710 BWI76_RS00715: BWI76_RS00715 - two-component sensor histidine kinase, at 145,529 to 146,902 _RS00715 Position (kb) 144 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1at 143.785 kb on - strandat 143.823 kb on + strandat 143.866 kb on - strandat 143.866 kb on - strandat 143.866 kb on - strandat 143.880 kb on + strandat 143.948 kb on + strandat 144.031 kb on + strandat 144.704 kb on - strandat 144.802 kb on - strandat 145.079 kb on + strand, within BWI76_RS00710at 145.087 kb on - strand, within BWI76_RS00710at 145.478 kb on + strandat 145.560 kb on + strandat 145.686 kb on - strand, within BWI76_RS00715at 146.062 kb on + strand, within BWI76_RS00715at 146.068 kb on + strand, within BWI76_RS00715at 146.146 kb on - strandat 146.232 kb on - strand, within BWI76_RS00715at 146.232 kb on - strand, within BWI76_RS00715at 146.345 kb on - strand, within BWI76_RS00715at 146.348 kb on + strand, within BWI76_RS00715

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.1 mg/ml
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143,785 - +1.3
143,823 + -0.2
143,866 - +0.1
143,866 - -0.1
143,866 - -0.2
143,880 + -0.2
143,948 + +0.5
144,031 + -0.5
144,704 - -0.0
144,802 - -0.6
145,079 + BWI76_RS00710 0.47 -0.5
145,087 - BWI76_RS00710 0.48 -1.7
145,478 + -0.4
145,560 + -0.1
145,686 - BWI76_RS00715 0.11 -2.2
146,062 + BWI76_RS00715 0.39 -1.0
146,068 + BWI76_RS00715 0.39 -1.2
146,146 - +1.0
146,232 - BWI76_RS00715 0.51 -2.7
146,232 - BWI76_RS00715 0.51 -2.0
146,345 - BWI76_RS00715 0.59 -3.4
146,348 + BWI76_RS00715 0.60 -0.8

Or see this region's nucleotide sequence