Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1873

Experiment: MoLS4 with Chlorite 3.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1872 and DvMF_1873 are separated by 410 nucleotidesDvMF_1873 and DvMF_1874 are separated by 364 nucleotides DvMF_1872: DvMF_1872 - Acetamidase/Formamidase (RefSeq), at 2,299,000 to 2,300,289 _1872 DvMF_1873: DvMF_1873 - Radical SAM domain protein (RefSeq), at 2,300,700 to 2,302,052 _1873 DvMF_1874: DvMF_1874 - hypothetical protein (RefSeq), at 2,302,417 to 2,304,678 _1874 Position (kb) 2300 2301 2302 2303Strain fitness (log2 ratio) -1 0 1 2at 2299.816 kb on - strand, within DvMF_1872at 2299.820 kb on - strand, within DvMF_1872at 2299.983 kb on + strand, within DvMF_1872at 2300.102 kb on - strand, within DvMF_1872at 2300.159 kb on - strand, within DvMF_1872at 2300.274 kb on - strandat 2300.451 kb on + strandat 2300.722 kb on + strandat 2300.792 kb on + strandat 2300.921 kb on - strand, within DvMF_1873at 2301.076 kb on + strand, within DvMF_1873at 2301.076 kb on + strand, within DvMF_1873at 2301.076 kb on + strand, within DvMF_1873at 2301.076 kb on + strand, within DvMF_1873at 2301.084 kb on - strand, within DvMF_1873at 2301.113 kb on + strand, within DvMF_1873at 2301.197 kb on - strand, within DvMF_1873at 2301.264 kb on + strand, within DvMF_1873at 2301.320 kb on + strand, within DvMF_1873at 2301.546 kb on - strand, within DvMF_1873at 2301.654 kb on + strand, within DvMF_1873at 2301.839 kb on + strand, within DvMF_1873at 2301.841 kb on + strand, within DvMF_1873at 2301.899 kb on + strand, within DvMF_1873at 2302.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 3.125 mM
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2,299,816 - DvMF_1872 0.63 +0.2
2,299,820 - DvMF_1872 0.64 -0.3
2,299,983 + DvMF_1872 0.76 -0.9
2,300,102 - DvMF_1872 0.85 -0.7
2,300,159 - DvMF_1872 0.90 -0.6
2,300,274 - -0.2
2,300,451 + -0.3
2,300,722 + +0.2
2,300,792 + -0.1
2,300,921 - DvMF_1873 0.16 -0.5
2,301,076 + DvMF_1873 0.28 +1.9
2,301,076 + DvMF_1873 0.28 -0.2
2,301,076 + DvMF_1873 0.28 -0.2
2,301,076 + DvMF_1873 0.28 +0.4
2,301,084 - DvMF_1873 0.28 -0.4
2,301,113 + DvMF_1873 0.31 -0.4
2,301,197 - DvMF_1873 0.37 -0.6
2,301,264 + DvMF_1873 0.42 +0.0
2,301,320 + DvMF_1873 0.46 -1.5
2,301,546 - DvMF_1873 0.63 -0.4
2,301,654 + DvMF_1873 0.71 -0.3
2,301,839 + DvMF_1873 0.84 -0.2
2,301,841 + DvMF_1873 0.84 -0.5
2,301,899 + DvMF_1873 0.89 -0.4
2,302,036 - -0.4

Or see this region's nucleotide sequence