Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1398

Experiment: MoLS4 with Chlorite 3.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1397 and DvMF_1398 are separated by 264 nucleotidesDvMF_1398 and DvMF_1399 are separated by 487 nucleotides DvMF_1397: DvMF_1397 - hypothetical protein (RefSeq), at 1,704,097 to 1,704,564 _1397 DvMF_1398: DvMF_1398 - ATP-dependent reduction of co(II)balamin (RamA-like) (from data), at 1,704,829 to 1,706,886 _1398 DvMF_1399: DvMF_1399 - Ribosomal small subunit Rsm22 (RefSeq), at 1,707,374 to 1,710,295 _1399 Position (kb) 1704 1705 1706 1707Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1703.847 kb on - strandat 1703.930 kb on + strandat 1704.111 kb on + strandat 1704.119 kb on - strandat 1704.360 kb on + strand, within DvMF_1397at 1704.368 kb on + strand, within DvMF_1397at 1704.400 kb on - strand, within DvMF_1397at 1704.400 kb on - strand, within DvMF_1397at 1704.574 kb on + strandat 1704.939 kb on + strandat 1704.956 kb on - strandat 1705.066 kb on + strand, within DvMF_1398at 1705.431 kb on + strand, within DvMF_1398at 1705.578 kb on - strand, within DvMF_1398at 1705.580 kb on + strand, within DvMF_1398at 1705.857 kb on - strand, within DvMF_1398at 1706.209 kb on + strand, within DvMF_1398at 1706.256 kb on + strand, within DvMF_1398at 1706.380 kb on - strand, within DvMF_1398at 1706.801 kb on - strandat 1706.986 kb on + strandat 1707.392 kb on + strandat 1707.447 kb on + strandat 1707.457 kb on + strandat 1707.596 kb on + strandat 1707.740 kb on - strand, within DvMF_1399

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorite 3.125 mM
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1,703,847 - -0.5
1,703,930 + -0.6
1,704,111 + -0.1
1,704,119 - +0.1
1,704,360 + DvMF_1397 0.56 -0.5
1,704,368 + DvMF_1397 0.58 -0.2
1,704,400 - DvMF_1397 0.65 -0.4
1,704,400 - DvMF_1397 0.65 -0.8
1,704,574 + +0.3
1,704,939 + -0.9
1,704,956 - -1.4
1,705,066 + DvMF_1398 0.12 +0.4
1,705,431 + DvMF_1398 0.29 -1.9
1,705,578 - DvMF_1398 0.36 -3.3
1,705,580 + DvMF_1398 0.36 -2.6
1,705,857 - DvMF_1398 0.50 -2.3
1,706,209 + DvMF_1398 0.67 -4.1
1,706,256 + DvMF_1398 0.69 -3.1
1,706,380 - DvMF_1398 0.75 -2.8
1,706,801 - -3.7
1,706,986 + -0.3
1,707,392 + -0.1
1,707,447 + -0.2
1,707,457 + -0.1
1,707,596 + -0.2
1,707,740 - DvMF_1399 0.13 -0.4

Or see this region's nucleotide sequence