Experiment: MoLS4 with L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt buk and DVU0629 are separated by 142 nucleotides DVU0629 and DVU0630 are separated by 3 nucleotides DVU0630 and DVU0631 are separated by 187 nucleotides
DVU0628: buk - butyrate kinase (TIGR), at 695,062 to 696,180
buk
DVU0629: DVU0629 - transcriptional regulator, TetR family (TIGR), at 696,323 to 696,883
DVU0629
DVU0630: DVU0630 - hypothetical protein (TIGR), at 696,887 to 697,063
DVU0630
DVU0631: DVU0631 - conserved hypothetical protein (TIGR), at 697,251 to 698,816
DVU0631
Position (kb) 696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 695.396 kb on - strand, within buk at 695.422 kb on + strand, within buk at 695.460 kb on + strand, within buk at 695.614 kb on + strand, within buk at 695.891 kb on - strand, within buk at 695.922 kb on + strand, within buk at 695.965 kb on + strand, within buk at 695.965 kb on + strand, within buk at 696.005 kb on + strand, within buk at 696.074 kb on + strand at 696.082 kb on - strand at 696.127 kb on - strand at 696.130 kb on + strand at 696.152 kb on + strand at 696.160 kb on - strand at 696.169 kb on + strand at 696.194 kb on - strand at 696.194 kb on - strand at 696.194 kb on - strand at 696.201 kb on + strand at 696.248 kb on + strand at 696.256 kb on - strand at 696.280 kb on + strand at 696.445 kb on - strand, within DVU0629 at 696.451 kb on + strand, within DVU0629 at 696.459 kb on - strand, within DVU0629 at 696.462 kb on + strand, within DVU0629 at 696.633 kb on - strand, within DVU0629 at 696.649 kb on - strand, within DVU0629 at 696.716 kb on - strand, within DVU0629 at 696.863 kb on - strand at 696.916 kb on + strand, within DVU0630 at 696.919 kb on - strand, within DVU0630 at 697.012 kb on - strand, within DVU0630 at 697.182 kb on + strand at 697.182 kb on + strand at 697.182 kb on + strand at 697.182 kb on + strand at 697.197 kb on + strand at 697.236 kb on - strand at 697.347 kb on + strand at 697.430 kb on + strand, within DVU0631 at 697.549 kb on + strand, within DVU0631 at 697.581 kb on + strand, within DVU0631 at 697.777 kb on - strand, within DVU0631 at 697.811 kb on + strand, within DVU0631 at 697.821 kb on + strand, within DVU0631
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Valine (N) remove 695,396 - buk DVU0628 0.30 -1.9 695,422 + buk DVU0628 0.32 -1.5 695,460 + buk DVU0628 0.36 -1.1 695,614 + buk DVU0628 0.49 -0.2 695,891 - buk DVU0628 0.74 -0.6 695,922 + buk DVU0628 0.77 -1.2 695,965 + buk DVU0628 0.81 -0.3 695,965 + buk DVU0628 0.81 -0.0 696,005 + buk DVU0628 0.84 -0.4 696,074 + -0.0 696,082 - -2.6 696,127 - -1.2 696,130 + -1.3 696,152 + -0.7 696,160 - -0.0 696,169 + +1.5 696,194 - -0.0 696,194 - -0.3 696,194 - -0.2 696,201 + -1.0 696,248 + -0.7 696,256 - -0.2 696,280 + +0.5 696,445 - DVU0629 0.22 -0.2 696,451 + DVU0629 0.23 -0.1 696,459 - DVU0629 0.24 +1.0 696,462 + DVU0629 0.25 -0.3 696,633 - DVU0629 0.55 +0.2 696,649 - DVU0629 0.58 +0.2 696,716 - DVU0629 0.70 +0.1 696,863 - -0.2 696,916 + DVU0630 0.16 -0.2 696,919 - DVU0630 0.18 -0.6 697,012 - DVU0630 0.71 -0.1 697,182 + +0.1 697,182 + +0.3 697,182 + +0.0 697,182 + +0.1 697,197 + +0.0 697,236 - +0.1 697,347 + -0.3 697,430 + DVU0631 0.11 +1.5 697,549 + DVU0631 0.19 -1.5 697,581 + DVU0631 0.21 -3.0 697,777 - DVU0631 0.34 -0.4 697,811 + DVU0631 0.36 -0.3 697,821 + DVU0631 0.36 -0.5
Or see this region's nucleotide sequence