Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.682.1 and Xcc-8004.683.1 are separated by 5 nucleotides Xcc-8004.683.1 and Xcc-8004.684.1 are separated by 600 nucleotides
Xcc-8004.682.1: Xcc-8004.682.1 - Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8), at 626,891 to 629,197
Xcc-8004.682.1
Xcc-8004.683.1: Xcc-8004.683.1 - hypothetical protein, at 629,203 to 629,535
Xcc-8004.683.1
Xcc-8004.684.1: Xcc-8004.684.1 - Extracellular ribonuclease precursor (EC 3.1.-.-), at 630,136 to 631,926
Xcc-8004.684.1
Position (kb) 629
630 Strain fitness (log2 ratio) -2
-1
0
1
2 at 628.411 kb on - strand, within Xcc-8004.682.1 at 628.411 kb on - strand, within Xcc-8004.682.1 at 629.159 kb on + strand at 629.160 kb on - strand at 629.244 kb on - strand, within Xcc-8004.683.1 at 629.294 kb on + strand, within Xcc-8004.683.1 at 629.294 kb on + strand, within Xcc-8004.683.1 at 629.295 kb on - strand, within Xcc-8004.683.1 at 629.402 kb on + strand, within Xcc-8004.683.1 at 629.403 kb on - strand, within Xcc-8004.683.1 at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.550 kb on + strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.551 kb on - strand at 629.659 kb on + strand at 629.660 kb on - strand at 629.660 kb on - strand at 629.660 kb on - strand at 629.660 kb on - strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.807 kb on + strand at 629.808 kb on - strand at 629.808 kb on - strand at 629.808 kb on - strand at 629.808 kb on - strand at 629.808 kb on - strand at 630.006 kb on + strand at 630.006 kb on + strand at 630.007 kb on - strand at 630.007 kb on - strand at 630.323 kb on + strand, within Xcc-8004.684.1 at 630.323 kb on + strand, within Xcc-8004.684.1 at 630.323 kb on + strand, within Xcc-8004.684.1 at 630.323 kb on + strand, within Xcc-8004.684.1 at 630.324 kb on - strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.437 kb on + strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1 at 630.438 kb on - strand, within Xcc-8004.684.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 628,411 - Xcc-8004.682.1 0.66 +0.2 628,411 - Xcc-8004.682.1 0.66 +0.1 629,159 + +0.6 629,160 - +0.8 629,244 - Xcc-8004.683.1 0.12 -0.9 629,294 + Xcc-8004.683.1 0.27 -0.9 629,294 + Xcc-8004.683.1 0.27 +2.4 629,295 - Xcc-8004.683.1 0.28 +1.0 629,402 + Xcc-8004.683.1 0.60 +0.8 629,403 - Xcc-8004.683.1 0.60 -2.4 629,550 + +1.0 629,550 + -0.6 629,550 + +2.2 629,550 + -0.2 629,550 + +2.0 629,550 + -0.0 629,550 + -0.6 629,550 + +0.5 629,551 - -0.7 629,551 - +1.4 629,551 - -1.0 629,551 - -0.0 629,551 - +0.8 629,551 - -2.7 629,551 - +2.5 629,659 + -2.0 629,660 - -0.3 629,660 - +0.1 629,660 - -0.8 629,660 - +1.6 629,807 + +0.8 629,807 + -0.8 629,807 + +2.0 629,807 + -0.6 629,807 + +0.8 629,807 + -1.4 629,807 + +0.6 629,807 + +0.8 629,807 + -0.1 629,807 + +0.3 629,807 + +1.5 629,807 + +0.8 629,808 - -0.3 629,808 - +1.7 629,808 - -0.1 629,808 - +0.1 629,808 - +1.0 630,006 + -2.4 630,006 + +0.6 630,007 - +0.2 630,007 - -1.2 630,323 + Xcc-8004.684.1 0.10 -2.0 630,323 + Xcc-8004.684.1 0.10 -1.2 630,323 + Xcc-8004.684.1 0.10 -1.6 630,323 + Xcc-8004.684.1 0.10 +0.3 630,324 - Xcc-8004.684.1 0.10 +0.2 630,437 + Xcc-8004.684.1 0.17 +0.4 630,437 + Xcc-8004.684.1 0.17 +0.5 630,437 + Xcc-8004.684.1 0.17 -0.9 630,437 + Xcc-8004.684.1 0.17 +0.5 630,437 + Xcc-8004.684.1 0.17 +0.3 630,437 + Xcc-8004.684.1 0.17 +0.8 630,437 + Xcc-8004.684.1 0.17 +0.3 630,437 + Xcc-8004.684.1 0.17 -0.5 630,437 + Xcc-8004.684.1 0.17 +0.3 630,437 + Xcc-8004.684.1 0.17 -0.7 630,437 + Xcc-8004.684.1 0.17 -0.7 630,437 + Xcc-8004.684.1 0.17 +1.0 630,437 + Xcc-8004.684.1 0.17 +0.1 630,437 + Xcc-8004.684.1 0.17 -0.3 630,437 + Xcc-8004.684.1 0.17 -0.8 630,437 + Xcc-8004.684.1 0.17 -0.4 630,437 + Xcc-8004.684.1 0.17 -0.9 630,437 + Xcc-8004.684.1 0.17 +0.5 630,437 + Xcc-8004.684.1 0.17 -2.3 630,437 + Xcc-8004.684.1 0.17 +0.4 630,437 + Xcc-8004.684.1 0.17 +0.6 630,438 - Xcc-8004.684.1 0.17 -1.0 630,438 - Xcc-8004.684.1 0.17 +0.4 630,438 - Xcc-8004.684.1 0.17 +1.1 630,438 - Xcc-8004.684.1 0.17 -2.4 630,438 - Xcc-8004.684.1 0.17 -0.1 630,438 - Xcc-8004.684.1 0.17 -0.2 630,438 - Xcc-8004.684.1 0.17 -1.4 630,438 - Xcc-8004.684.1 0.17 +0.9 630,438 - Xcc-8004.684.1 0.17 +1.0 630,438 - Xcc-8004.684.1 0.17 -0.3 630,438 - Xcc-8004.684.1 0.17 +0.1 630,438 - Xcc-8004.684.1 0.17 -0.9 630,438 - Xcc-8004.684.1 0.17 +0.9 630,438 - Xcc-8004.684.1 0.17 -0.1
Or see this region's nucleotide sequence