Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.645.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.643.1 and Xcc-8004.644.1 are separated by 3 nucleotidesXcc-8004.644.1 and Xcc-8004.645.1 are separated by 79 nucleotidesXcc-8004.645.1 and Xcc-8004.646.1 are separated by 76 nucleotides Xcc-8004.643.1: Xcc-8004.643.1 - FIG071884: Hypothetical protein, at 587,889 to 588,626 Xcc-8004.643.1 Xcc-8004.644.1: Xcc-8004.644.1 - Integral membrane protein CcmA involved in cell shape determination, at 588,630 to 589,082 Xcc-8004.644.1 Xcc-8004.645.1: Xcc-8004.645.1 - probable iron binding protein from the HesB_IscA_SufA family, at 589,162 to 589,548 Xcc-8004.645.1 Xcc-8004.646.1: Xcc-8004.646.1 - NADH pyrophosphatase (EC 3.6.1.22), at 589,625 to 590,524 Xcc-8004.646.1 Position (kb) 589 590Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.229 kb on + strand, within Xcc-8004.643.1at 588.230 kb on - strand, within Xcc-8004.643.1at 588.230 kb on - strand, within Xcc-8004.643.1at 588.230 kb on - strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.237 kb on + strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.238 kb on - strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.327 kb on + strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.328 kb on - strand, within Xcc-8004.643.1at 588.474 kb on + strand, within Xcc-8004.643.1at 588.475 kb on - strand, within Xcc-8004.643.1at 588.475 kb on - strand, within Xcc-8004.643.1at 588.475 kb on - strand, within Xcc-8004.643.1at 588.487 kb on - strand, within Xcc-8004.643.1at 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.624 kb on + strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.625 kb on - strandat 588.675 kb on - strandat 588.675 kb on - strandat 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.732 kb on + strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.733 kb on - strand, within Xcc-8004.644.1at 588.930 kb on + strand, within Xcc-8004.644.1at 588.931 kb on - strand, within Xcc-8004.644.1at 588.931 kb on - strand, within Xcc-8004.644.1at 588.931 kb on - strand, within Xcc-8004.644.1at 589.167 kb on + strandat 589.167 kb on + strandat 589.207 kb on + strand, within Xcc-8004.645.1at 589.725 kb on + strand, within Xcc-8004.646.1at 589.725 kb on + strand, within Xcc-8004.646.1at 589.726 kb on - strand, within Xcc-8004.646.1at 589.726 kb on - strand, within Xcc-8004.646.1at 589.826 kb on - strand, within Xcc-8004.646.1at 590.096 kb on + strand, within Xcc-8004.646.1at 590.096 kb on + strand, within Xcc-8004.646.1at 590.096 kb on + strand, within Xcc-8004.646.1at 590.096 kb on + strand, within Xcc-8004.646.1at 590.096 kb on + strand, within Xcc-8004.646.1at 590.096 kb on + strand, within Xcc-8004.646.1at 590.097 kb on - strand, within Xcc-8004.646.1at 590.097 kb on - strand, within Xcc-8004.646.1at 590.186 kb on + strand, within Xcc-8004.646.1at 590.187 kb on - strand, within Xcc-8004.646.1at 590.288 kb on + strand, within Xcc-8004.646.1at 590.288 kb on + strand, within Xcc-8004.646.1at 590.288 kb on + strand, within Xcc-8004.646.1at 590.289 kb on - strand, within Xcc-8004.646.1at 590.289 kb on - strand, within Xcc-8004.646.1at 590.289 kb on - strand, within Xcc-8004.646.1at 590.456 kb on - strandat 590.473 kb on + strandat 590.473 kb on + strandat 590.473 kb on + strandat 590.473 kb on + strandat 590.473 kb on + strandat 590.507 kb on + strandat 590.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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588,229 + Xcc-8004.643.1 0.46 +0.0
588,229 + Xcc-8004.643.1 0.46 -1.5
588,229 + Xcc-8004.643.1 0.46 +0.5
588,229 + Xcc-8004.643.1 0.46 +0.2
588,229 + Xcc-8004.643.1 0.46 -1.2
588,229 + Xcc-8004.643.1 0.46 +0.4
588,230 - Xcc-8004.643.1 0.46 +0.8
588,230 - Xcc-8004.643.1 0.46 +1.5
588,230 - Xcc-8004.643.1 0.46 -0.9
588,237 + Xcc-8004.643.1 0.47 -0.3
588,237 + Xcc-8004.643.1 0.47 +0.9
588,237 + Xcc-8004.643.1 0.47 +0.2
588,237 + Xcc-8004.643.1 0.47 -2.2
588,237 + Xcc-8004.643.1 0.47 -2.9
588,238 - Xcc-8004.643.1 0.47 -1.7
588,238 - Xcc-8004.643.1 0.47 +2.4
588,238 - Xcc-8004.643.1 0.47 -0.6
588,238 - Xcc-8004.643.1 0.47 -0.5
588,238 - Xcc-8004.643.1 0.47 -1.1
588,238 - Xcc-8004.643.1 0.47 -1.0
588,238 - Xcc-8004.643.1 0.47 -0.7
588,238 - Xcc-8004.643.1 0.47 -1.2
588,238 - Xcc-8004.643.1 0.47 -0.3
588,238 - Xcc-8004.643.1 0.47 -0.2
588,327 + Xcc-8004.643.1 0.59 +0.2
588,327 + Xcc-8004.643.1 0.59 +0.7
588,327 + Xcc-8004.643.1 0.59 +0.4
588,327 + Xcc-8004.643.1 0.59 -1.2
588,327 + Xcc-8004.643.1 0.59 -1.4
588,327 + Xcc-8004.643.1 0.59 +1.9
588,327 + Xcc-8004.643.1 0.59 -0.1
588,327 + Xcc-8004.643.1 0.59 +0.2
588,328 - Xcc-8004.643.1 0.59 -2.5
588,328 - Xcc-8004.643.1 0.59 -0.2
588,328 - Xcc-8004.643.1 0.59 -0.0
588,328 - Xcc-8004.643.1 0.59 +0.5
588,328 - Xcc-8004.643.1 0.59 -0.2
588,328 - Xcc-8004.643.1 0.59 -0.7
588,328 - Xcc-8004.643.1 0.59 +1.0
588,474 + Xcc-8004.643.1 0.79 -0.3
588,475 - Xcc-8004.643.1 0.79 -0.6
588,475 - Xcc-8004.643.1 0.79 -1.2
588,475 - Xcc-8004.643.1 0.79 +0.2
588,487 - Xcc-8004.643.1 0.81 -1.1
588,624 + +0.1
588,624 + +0.7
588,624 + -0.4
588,624 + +1.0
588,624 + -0.0
588,624 + -0.5
588,624 + +1.1
588,625 - +0.2
588,625 - +0.6
588,625 - -0.1
588,625 - -0.6
588,625 - +0.7
588,625 - +1.1
588,625 - -0.2
588,675 - -0.3
588,675 - -1.4
588,732 + Xcc-8004.644.1 0.23 -0.4
588,732 + Xcc-8004.644.1 0.23 -0.1
588,732 + Xcc-8004.644.1 0.23 +1.6
588,732 + Xcc-8004.644.1 0.23 +0.9
588,732 + Xcc-8004.644.1 0.23 -2.5
588,732 + Xcc-8004.644.1 0.23 -0.1
588,732 + Xcc-8004.644.1 0.23 -0.2
588,732 + Xcc-8004.644.1 0.23 -1.8
588,732 + Xcc-8004.644.1 0.23 -0.3
588,732 + Xcc-8004.644.1 0.23 -0.2
588,732 + Xcc-8004.644.1 0.23 +0.1
588,732 + Xcc-8004.644.1 0.23 +1.3
588,732 + Xcc-8004.644.1 0.23 -0.5
588,732 + Xcc-8004.644.1 0.23 +0.2
588,733 - Xcc-8004.644.1 0.23 -1.1
588,733 - Xcc-8004.644.1 0.23 -1.6
588,733 - Xcc-8004.644.1 0.23 -1.0
588,733 - Xcc-8004.644.1 0.23 -0.6
588,733 - Xcc-8004.644.1 0.23 -3.5
588,733 - Xcc-8004.644.1 0.23 +0.2
588,733 - Xcc-8004.644.1 0.23 -0.1
588,733 - Xcc-8004.644.1 0.23 -0.6
588,733 - Xcc-8004.644.1 0.23 -2.7
588,733 - Xcc-8004.644.1 0.23 -0.2
588,733 - Xcc-8004.644.1 0.23 +0.5
588,733 - Xcc-8004.644.1 0.23 +0.7
588,733 - Xcc-8004.644.1 0.23 -0.2
588,733 - Xcc-8004.644.1 0.23 +1.3
588,930 + Xcc-8004.644.1 0.66 +1.7
588,931 - Xcc-8004.644.1 0.66 -1.6
588,931 - Xcc-8004.644.1 0.66 +0.9
588,931 - Xcc-8004.644.1 0.66 +0.3
589,167 + -1.2
589,167 + -0.2
589,207 + Xcc-8004.645.1 0.12 -1.4
589,725 + Xcc-8004.646.1 0.11 +0.6
589,725 + Xcc-8004.646.1 0.11 -2.6
589,726 - Xcc-8004.646.1 0.11 -0.7
589,726 - Xcc-8004.646.1 0.11 -1.1
589,826 - Xcc-8004.646.1 0.22 -0.8
590,096 + Xcc-8004.646.1 0.52 -1.0
590,096 + Xcc-8004.646.1 0.52 -0.1
590,096 + Xcc-8004.646.1 0.52 +0.3
590,096 + Xcc-8004.646.1 0.52 -1.1
590,096 + Xcc-8004.646.1 0.52 +0.2
590,096 + Xcc-8004.646.1 0.52 +1.5
590,097 - Xcc-8004.646.1 0.52 -0.5
590,097 - Xcc-8004.646.1 0.52 +0.8
590,186 + Xcc-8004.646.1 0.62 +1.0
590,187 - Xcc-8004.646.1 0.62 +0.4
590,288 + Xcc-8004.646.1 0.74 +0.5
590,288 + Xcc-8004.646.1 0.74 +0.8
590,288 + Xcc-8004.646.1 0.74 +0.0
590,289 - Xcc-8004.646.1 0.74 +2.8
590,289 - Xcc-8004.646.1 0.74 -0.1
590,289 - Xcc-8004.646.1 0.74 -0.3
590,456 - -0.6
590,473 + -2.2
590,473 + +0.1
590,473 + +0.1
590,473 + +1.2
590,473 + -0.7
590,507 + -1.2
590,507 + +0.9

Or see this region's nucleotide sequence